Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
USHBP1Q8N6Y0 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC25■■□□□ 1.59
USHBP1Q8N6Y0 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC25■■□□□ 1.59
USHBP1Q8N6Y0 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC25■■□□□ 1.59
USHBP1Q8N6Y0 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
USHBP1Q8N6Y0 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC25■■□□□ 1.59
USHBP1Q8N6Y0 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC25■■□□□ 1.59
USHBP1Q8N6Y0 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC25■■□□□ 1.59
USHBP1Q8N6Y0 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC25■■□□□ 1.59
USHBP1Q8N6Y0 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC25■■□□□ 1.59
USHBP1Q8N6Y0 TEX21P-204ENST00000641479 1693 ntBASIC25■■□□□ 1.59
USHBP1Q8N6Y0 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
USHBP1Q8N6Y0 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
USHBP1Q8N6Y0 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC24.99■■□□□ 1.59
USHBP1Q8N6Y0 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC24.99■■□□□ 1.59
USHBP1Q8N6Y0 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC24.99■■□□□ 1.59
USHBP1Q8N6Y0 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC24.99■■□□□ 1.59
USHBP1Q8N6Y0 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC24.99■■□□□ 1.59
USHBP1Q8N6Y0 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
USHBP1Q8N6Y0 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
USHBP1Q8N6Y0 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC24.99■■□□□ 1.59
USHBP1Q8N6Y0 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC24.99■■□□□ 1.59
USHBP1Q8N6Y0 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC24.99■■□□□ 1.59
USHBP1Q8N6Y0 AC092329.2-201ENST00000598402 547 ntBASIC24.99■■□□□ 1.59
USHBP1Q8N6Y0 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
USHBP1Q8N6Y0 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC24.99■■□□□ 1.59
USHBP1Q8N6Y0 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 AL162741.1-201ENST00000565563 1558 ntBASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 PRR29-207ENST00000580752 458 ntTSL 3 BASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 WDR6-223ENST00000627177 207 ntTSL 2 BASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC24.98■■□□□ 1.59
USHBP1Q8N6Y0 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
USHBP1Q8N6Y0 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
USHBP1Q8N6Y0 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
USHBP1Q8N6Y0 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC24.97■■□□□ 1.59
USHBP1Q8N6Y0 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC24.97■■□□□ 1.59
USHBP1Q8N6Y0 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC24.97■■□□□ 1.59
USHBP1Q8N6Y0 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC24.97■■□□□ 1.59
USHBP1Q8N6Y0 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
USHBP1Q8N6Y0 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC24.97■■□□□ 1.59
USHBP1Q8N6Y0 AC246785.2-201ENST00000432512 513 ntBASIC24.97■■□□□ 1.59
USHBP1Q8N6Y0 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC24.97■■□□□ 1.59
USHBP1Q8N6Y0 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC24.97■■□□□ 1.59
USHBP1Q8N6Y0 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC24.97■■□□□ 1.59
USHBP1Q8N6Y0 AC112497.1-201ENST00000624824 639 ntBASIC24.97■■□□□ 1.59
USHBP1Q8N6Y0 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC24.97■■□□□ 1.59
USHBP1Q8N6Y0 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC24.97■■□□□ 1.59
USHBP1Q8N6Y0 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
USHBP1Q8N6Y0 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
USHBP1Q8N6Y0 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC24.97■■□□□ 1.59
USHBP1Q8N6Y0 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC24.97■■□□□ 1.59
USHBP1Q8N6Y0 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC24.97■■□□□ 1.59
USHBP1Q8N6Y0 AC008556.1-201ENST00000610908 2040 ntBASIC24.96■■□□□ 1.59
USHBP1Q8N6Y0 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC24.96■■□□□ 1.59
USHBP1Q8N6Y0 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC24.96■■□□□ 1.59
USHBP1Q8N6Y0 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
USHBP1Q8N6Y0 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC24.96■■□□□ 1.59
USHBP1Q8N6Y0 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
USHBP1Q8N6Y0 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC24.96■■□□□ 1.59
USHBP1Q8N6Y0 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC24.96■■□□□ 1.59
USHBP1Q8N6Y0 PPIH-202ENST00000372549 327 ntTSL 3 BASIC24.96■■□□□ 1.59
USHBP1Q8N6Y0 BX276092.5-203ENST00000456199 560 ntBASIC24.96■■□□□ 1.59
USHBP1Q8N6Y0 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC24.96■■□□□ 1.59
USHBP1Q8N6Y0 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC24.96■■□□□ 1.59
USHBP1Q8N6Y0 MIR3652-201ENST00000579335 131 ntBASIC24.96■■□□□ 1.59
USHBP1Q8N6Y0 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC24.96■■□□□ 1.59
USHBP1Q8N6Y0 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC24.96■■□□□ 1.59
USHBP1Q8N6Y0 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
USHBP1Q8N6Y0 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC24.95■■□□□ 1.59
USHBP1Q8N6Y0 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
USHBP1Q8N6Y0 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC24.95■■□□□ 1.59
USHBP1Q8N6Y0 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
USHBP1Q8N6Y0 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
USHBP1Q8N6Y0 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC24.95■■□□□ 1.58
USHBP1Q8N6Y0 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
USHBP1Q8N6Y0 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC24.95■■□□□ 1.58
USHBP1Q8N6Y0 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC24.95■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms