Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC22■■□□□ 1.11
CCDC144BQ3MJ40 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC22■■□□□ 1.11
CCDC144BQ3MJ40 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC22■■□□□ 1.11
CCDC144BQ3MJ40 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC144BQ3MJ40 AC091390.4-202ENST00000476426 537 ntBASIC22■■□□□ 1.11
CCDC144BQ3MJ40 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC22■■□□□ 1.11
CCDC144BQ3MJ40 AC022616.7-201ENST00000525383 220 ntBASIC22■■□□□ 1.11
CCDC144BQ3MJ40 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC22■■□□□ 1.11
CCDC144BQ3MJ40 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC144BQ3MJ40 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC22■■□□□ 1.11
CCDC144BQ3MJ40 CD37-204ENST00000535669 1674 ntTSL 2 BASIC22■■□□□ 1.11
CCDC144BQ3MJ40 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC22■■□□□ 1.11
CCDC144BQ3MJ40 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
CCDC144BQ3MJ40 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC22■■□□□ 1.11
CCDC144BQ3MJ40 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC144BQ3MJ40 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC144BQ3MJ40 TP73-202ENST00000354437 2140 ntTSL 5 BASIC22■■□□□ 1.11
CCDC144BQ3MJ40 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
CCDC144BQ3MJ40 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
CCDC144BQ3MJ40 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 AC117947.1-201ENST00000427448 529 ntBASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 AC063952.2-201ENST00000498792 1227 ntBASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC144BQ3MJ40 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 AC007613.1-201ENST00000572811 2597 ntBASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 CCR12P-201ENST00000446203 998 ntBASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 Z85996.1-201ENST00000494644 937 ntBASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 AL138966.2-201ENST00000621997 464 ntBASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC144BQ3MJ40 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC144BQ3MJ40 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC21.97■■□□□ 1.11
CCDC144BQ3MJ40 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC144BQ3MJ40 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC144BQ3MJ40 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC144BQ3MJ40 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC144BQ3MJ40 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC144BQ3MJ40 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC144BQ3MJ40 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC21.97■■□□□ 1.11
CCDC144BQ3MJ40 SLC25A1P2-201ENST00000430693 912 ntBASIC21.97■■□□□ 1.11
CCDC144BQ3MJ40 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC21.97■■□□□ 1.11
CCDC144BQ3MJ40 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC21.97■■□□□ 1.11
CCDC144BQ3MJ40 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC21.97■■□□□ 1.11
CCDC144BQ3MJ40 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC21.97■■□□□ 1.11
CCDC144BQ3MJ40 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC21.97■■□□□ 1.11
CCDC144BQ3MJ40 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC144BQ3MJ40 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC21.97■■□□□ 1.11
CCDC144BQ3MJ40 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC21.97■■□□□ 1.11
CCDC144BQ3MJ40 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC21.97■■□□□ 1.11
CCDC144BQ3MJ40 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC21.97■■□□□ 1.11
CCDC144BQ3MJ40 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms