Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.9■□□□□ 0.94
PEX3P56589 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
PEX3P56589 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PEX3P56589 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
PEX3P56589 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
PEX3P56589 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
PEX3P56589 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
PEX3P56589 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
PEX3P56589 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
PEX3P56589 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.89■□□□□ 0.94
PEX3P56589 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC20.89■□□□□ 0.93
PEX3P56589 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PEX3P56589 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PEX3P56589 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PEX3P56589 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.89■□□□□ 0.93
PEX3P56589 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.89■□□□□ 0.93
PEX3P56589 BUB3-202ENST00000368859 667 ntTSL 3 BASIC20.89■□□□□ 0.93
PEX3P56589 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PEX3P56589 AC008622.2-201ENST00000617006 1229 ntBASIC20.89■□□□□ 0.93
PEX3P56589 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
PEX3P56589 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PEX3P56589 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PEX3P56589 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PEX3P56589 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PEX3P56589 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PEX3P56589 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.88■□□□□ 0.93
PEX3P56589 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PEX3P56589 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PEX3P56589 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PEX3P56589 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PEX3P56589 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PEX3P56589 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PEX3P56589 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC20.88■□□□□ 0.93
PEX3P56589 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PEX3P56589 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PEX3P56589 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC20.88■□□□□ 0.93
PEX3P56589 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.88■□□□□ 0.93
PEX3P56589 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC20.88■□□□□ 0.93
PEX3P56589 AP003041.3-201ENST00000527151 707 ntBASIC20.88■□□□□ 0.93
PEX3P56589 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.88■□□□□ 0.93
PEX3P56589 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PEX3P56589 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PEX3P56589 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
PEX3P56589 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PEX3P56589 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
PEX3P56589 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC20.88■□□□□ 0.93
PEX3P56589 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PEX3P56589 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC20.87■□□□□ 0.93
PEX3P56589 KRT8P3-201ENST00000519669 1449 ntBASIC20.87■□□□□ 0.93
PEX3P56589 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PEX3P56589 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PEX3P56589 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.87■□□□□ 0.93
PEX3P56589 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PEX3P56589 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
PEX3P56589 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PEX3P56589 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PEX3P56589 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.87■□□□□ 0.93
PEX3P56589 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PEX3P56589 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PEX3P56589 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.87■□□□□ 0.93
PEX3P56589 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PEX3P56589 FAM87A-204ENST00000613235 858 ntBASIC20.87■□□□□ 0.93
PEX3P56589 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.87■□□□□ 0.93
PEX3P56589 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PEX3P56589 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
PEX3P56589 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.87■□□□□ 0.93
PEX3P56589 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PEX3P56589 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
PEX3P56589 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
PEX3P56589 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PEX3P56589 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PEX3P56589 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
PEX3P56589 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PEX3P56589 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.86■□□□□ 0.93
PEX3P56589 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
PEX3P56589 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PEX3P56589 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PEX3P56589 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
PEX3P56589 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
PEX3P56589 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.86■□□□□ 0.93
PEX3P56589 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.86■□□□□ 0.93
PEX3P56589 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC20.86■□□□□ 0.93
PEX3P56589 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC20.86■□□□□ 0.93
PEX3P56589 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.86■□□□□ 0.93
PEX3P56589 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PEX3P56589 KATNBL1P6-202ENST00000562413 1466 ntBASIC20.86■□□□□ 0.93
PEX3P56589 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PEX3P56589 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PEX3P56589 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PEX3P56589 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
PEX3P56589 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PEX3P56589 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PEX3P56589 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
PEX3P56589 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
PEX3P56589 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.85■□□□□ 0.93
PEX3P56589 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PEX3P56589 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PEX3P56589 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
PEX3P56589 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
PEX3P56589 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms