Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC005104.2-201ENST00000427818 678 ntBASIC26.26■■□□□ 1.79
MSH6P52701 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
MSH6P52701 AF186996.4-201ENST00000467186 377 ntBASIC26.26■■□□□ 1.79
MSH6P52701 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC26.26■■□□□ 1.79
MSH6P52701 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC26.26■■□□□ 1.79
MSH6P52701 LINC02084-201ENST00000606069 1096 ntBASIC26.26■■□□□ 1.79
MSH6P52701 AL355385.1-201ENST00000606123 409 ntBASIC26.26■■□□□ 1.79
MSH6P52701 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
MSH6P52701 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC26.26■■□□□ 1.79
MSH6P52701 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
MSH6P52701 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
MSH6P52701 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
MSH6P52701 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
MSH6P52701 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
MSH6P52701 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC26.25■■□□□ 1.79
MSH6P52701 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC26.25■■□□□ 1.79
MSH6P52701 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
MSH6P52701 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
MSH6P52701 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC26.25■■□□□ 1.79
MSH6P52701 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC26.24■■□□□ 1.79
MSH6P52701 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
MSH6P52701 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC26.24■■□□□ 1.79
MSH6P52701 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
MSH6P52701 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
MSH6P52701 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
MSH6P52701 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
MSH6P52701 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC26.24■■□□□ 1.79
MSH6P52701 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC26.24■■□□□ 1.79
MSH6P52701 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC26.24■■□□□ 1.79
MSH6P52701 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC26.24■■□□□ 1.79
MSH6P52701 AC093909.1-201ENST00000504731 1122 ntBASIC26.24■■□□□ 1.79
MSH6P52701 CDV3-207ENST00000508481 661 ntTSL 3 BASIC26.24■■□□□ 1.79
MSH6P52701 GPR32P1-201ENST00000601788 811 ntBASIC26.24■■□□□ 1.79
MSH6P52701 AC148477.8-201ENST00000624298 468 ntBASIC26.24■■□□□ 1.79
MSH6P52701 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC26.24■■□□□ 1.79
MSH6P52701 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
MSH6P52701 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
MSH6P52701 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC26.24■■□□□ 1.79
MSH6P52701 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC26.24■■□□□ 1.79
MSH6P52701 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
MSH6P52701 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC26.23■■□□□ 1.79
MSH6P52701 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
MSH6P52701 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
MSH6P52701 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
MSH6P52701 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC26.23■■□□□ 1.79
MSH6P52701 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
MSH6P52701 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
MSH6P52701 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
MSH6P52701 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC26.23■■□□□ 1.79
MSH6P52701 VENTXP7-201ENST00000475503 772 ntBASIC26.23■■□□□ 1.79
MSH6P52701 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC26.23■■□□□ 1.79
MSH6P52701 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
MSH6P52701 AL691403.2-201ENST00000618460 490 ntBASIC26.23■■□□□ 1.79
MSH6P52701 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
MSH6P52701 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
MSH6P52701 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC26.23■■□□□ 1.79
MSH6P52701 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC26.23■■□□□ 1.79
MSH6P52701 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
MSH6P52701 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
MSH6P52701 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC26.23■■□□□ 1.79
MSH6P52701 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
MSH6P52701 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC26.22■■□□□ 1.79
MSH6P52701 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
MSH6P52701 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
MSH6P52701 EMD-201ENST00000369835 966 ntTSL 3 BASIC26.22■■□□□ 1.79
MSH6P52701 GGCT-205ENST00000409436 954 ntTSL 3 BASIC26.22■■□□□ 1.79
MSH6P52701 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
MSH6P52701 RPL18-209ENST00000550645 463 ntTSL 5 BASIC26.22■■□□□ 1.79
MSH6P52701 RPL18-214ENST00000552588 559 ntTSL 3 BASIC26.22■■□□□ 1.79
MSH6P52701 AP005901.3-202ENST00000581653 237 ntBASIC26.22■■□□□ 1.79
MSH6P52701 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
MSH6P52701 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
MSH6P52701 MIR7706-201ENST00000613747 67 ntBASIC26.22■■□□□ 1.79
MSH6P52701 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC26.22■■□□□ 1.79
MSH6P52701 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
MSH6P52701 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
MSH6P52701 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
MSH6P52701 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC26.21■■□□□ 1.79
MSH6P52701 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
MSH6P52701 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
MSH6P52701 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC26.21■■□□□ 1.79
MSH6P52701 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
MSH6P52701 AC073648.2-201ENST00000510116 352 ntBASIC26.21■■□□□ 1.79
MSH6P52701 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC26.21■■□□□ 1.79
MSH6P52701 PIN1-206ENST00000587625 878 ntTSL 2 BASIC26.21■■□□□ 1.79
MSH6P52701 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC26.21■■□□□ 1.79
MSH6P52701 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC26.21■■□□□ 1.79
MSH6P52701 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC26.21■■□□□ 1.79
MSH6P52701 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
MSH6P52701 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
MSH6P52701 AC022898.2-201ENST00000616822 1312 ntBASIC26.21■■□□□ 1.79
MSH6P52701 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
MSH6P52701 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
MSH6P52701 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC26.2■■□□□ 1.79
MSH6P52701 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.79
MSH6P52701 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
MSH6P52701 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC26.2■■□□□ 1.79
MSH6P52701 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
MSH6P52701 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
MSH6P52701 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC26.2■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms