Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHMT2P34897 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SHMT2P34897 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.57■□□□□ 0.56
SHMT2P34897 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHMT2P34897 AC096733.2-201ENST00000609937 1394 ntBASIC18.57■□□□□ 0.56
SHMT2P34897 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHMT2P34897 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.57■□□□□ 0.56
SHMT2P34897 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.57■□□□□ 0.56
SHMT2P34897 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHMT2P34897 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHMT2P34897 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHMT2P34897 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHMT2P34897 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.57■□□□□ 0.56
SHMT2P34897 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHMT2P34897 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHMT2P34897 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHMT2P34897 CRYGFP-201ENST00000418459 633 ntBASIC18.57■□□□□ 0.56
SHMT2P34897 TSPY21P-201ENST00000433481 731 ntBASIC18.57■□□□□ 0.56
SHMT2P34897 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC18.57■□□□□ 0.56
SHMT2P34897 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
SHMT2P34897 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SHMT2P34897 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.57■□□□□ 0.56
SHMT2P34897 PRSS44-201ENST00000515154 1146 ntBASIC18.57■□□□□ 0.56
SHMT2P34897 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.57■□□□□ 0.56
SHMT2P34897 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
SHMT2P34897 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SHMT2P34897 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.57■□□□□ 0.56
SHMT2P34897 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SHMT2P34897 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHMT2P34897 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SHMT2P34897 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
SHMT2P34897 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHMT2P34897 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHMT2P34897 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
SHMT2P34897 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
SHMT2P34897 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHMT2P34897 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHMT2P34897 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.56■□□□□ 0.56
SHMT2P34897 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.56■□□□□ 0.56
SHMT2P34897 Z82202.1-201ENST00000623446 1880 ntBASIC18.56■□□□□ 0.56
SHMT2P34897 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHMT2P34897 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SHMT2P34897 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.56■□□□□ 0.56
SHMT2P34897 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.56■□□□□ 0.56
SHMT2P34897 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
SHMT2P34897 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHMT2P34897 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.56■□□□□ 0.56
SHMT2P34897 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHMT2P34897 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHMT2P34897 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SHMT2P34897 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SHMT2P34897 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC18.56■□□□□ 0.56
SHMT2P34897 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC18.56■□□□□ 0.56
SHMT2P34897 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC18.56■□□□□ 0.56
SHMT2P34897 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.56■□□□□ 0.56
SHMT2P34897 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHMT2P34897 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.56■□□□□ 0.56
SHMT2P34897 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SHMT2P34897 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHMT2P34897 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHMT2P34897 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHMT2P34897 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SHMT2P34897 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
SHMT2P34897 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.55■□□□□ 0.56
SHMT2P34897 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.55■□□□□ 0.56
SHMT2P34897 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHMT2P34897 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHMT2P34897 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.55■□□□□ 0.56
SHMT2P34897 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.55■□□□□ 0.56
SHMT2P34897 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHMT2P34897 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHMT2P34897 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHMT2P34897 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHMT2P34897 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHMT2P34897 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHMT2P34897 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHMT2P34897 MFAP1P1-201ENST00000442257 1255 ntBASIC18.55■□□□□ 0.56
SHMT2P34897 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.55■□□□□ 0.56
SHMT2P34897 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SHMT2P34897 RPS20-210ENST00000523936 899 ntTSL 2 BASIC18.55■□□□□ 0.56
SHMT2P34897 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SHMT2P34897 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.55■□□□□ 0.56
SHMT2P34897 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHMT2P34897 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
SHMT2P34897 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.55■□□□□ 0.56
SHMT2P34897 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHMT2P34897 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SHMT2P34897 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHMT2P34897 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.55■□□□□ 0.56
SHMT2P34897 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHMT2P34897 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHMT2P34897 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHMT2P34897 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHMT2P34897 AC005082.1-201ENST00000413042 2259 ntBASIC18.54■□□□□ 0.56
SHMT2P34897 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.54■□□□□ 0.56
SHMT2P34897 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHMT2P34897 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.54■□□□□ 0.56
SHMT2P34897 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHMT2P34897 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.54■□□□□ 0.56
SHMT2P34897 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 65.8 ms