Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.99■□□□□ 0.79
BDNFP23560 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
BDNFP23560 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
BDNFP23560 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
BDNFP23560 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.99■□□□□ 0.79
BDNFP23560 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.99■□□□□ 0.79
BDNFP23560 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
BDNFP23560 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
BDNFP23560 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
BDNFP23560 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
BDNFP23560 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
BDNFP23560 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
BDNFP23560 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
BDNFP23560 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
BDNFP23560 PHB2-202ENST00000440277 996 ntTSL 5 BASIC19.99■□□□□ 0.79
BDNFP23560 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.99■□□□□ 0.79
BDNFP23560 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.99■□□□□ 0.79
BDNFP23560 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.99■□□□□ 0.79
BDNFP23560 GPAT2P1-201ENST00000444924 1672 ntBASIC19.99■□□□□ 0.79
BDNFP23560 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
BDNFP23560 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
BDNFP23560 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
BDNFP23560 KRT8P3-201ENST00000519669 1449 ntBASIC19.99■□□□□ 0.79
BDNFP23560 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
BDNFP23560 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
BDNFP23560 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
BDNFP23560 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
BDNFP23560 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
BDNFP23560 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
BDNFP23560 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
BDNFP23560 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
BDNFP23560 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
BDNFP23560 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
BDNFP23560 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
BDNFP23560 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
BDNFP23560 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.98■□□□□ 0.79
BDNFP23560 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
BDNFP23560 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
BDNFP23560 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
BDNFP23560 AK4P3-201ENST00000418260 669 ntBASIC19.98■□□□□ 0.79
BDNFP23560 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
BDNFP23560 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
BDNFP23560 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
BDNFP23560 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
BDNFP23560 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.98■□□□□ 0.79
BDNFP23560 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
BDNFP23560 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
BDNFP23560 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC19.98■□□□□ 0.79
BDNFP23560 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC19.98■□□□□ 0.79
BDNFP23560 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
BDNFP23560 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
BDNFP23560 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
BDNFP23560 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC19.97■□□□□ 0.79
BDNFP23560 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.97■□□□□ 0.79
BDNFP23560 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
BDNFP23560 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
BDNFP23560 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.97■□□□□ 0.79
BDNFP23560 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
BDNFP23560 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
BDNFP23560 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.97■□□□□ 0.79
BDNFP23560 COX11P1-201ENST00000489116 835 ntBASIC19.97■□□□□ 0.79
BDNFP23560 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
BDNFP23560 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC19.97■□□□□ 0.79
BDNFP23560 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.97■□□□□ 0.79
BDNFP23560 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
BDNFP23560 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
BDNFP23560 AL445228.2-201ENST00000605589 952 ntBASIC19.97■□□□□ 0.79
BDNFP23560 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
BDNFP23560 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC19.97■□□□□ 0.79
BDNFP23560 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
BDNFP23560 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
BDNFP23560 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
BDNFP23560 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
BDNFP23560 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
BDNFP23560 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
BDNFP23560 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
BDNFP23560 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
BDNFP23560 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
BDNFP23560 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
BDNFP23560 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
BDNFP23560 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.97■□□□□ 0.79
BDNFP23560 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
BDNFP23560 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
BDNFP23560 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
BDNFP23560 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
BDNFP23560 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
BDNFP23560 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
BDNFP23560 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC19.96■□□□□ 0.79
BDNFP23560 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
BDNFP23560 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
BDNFP23560 FP475955.4-201ENST00000623131 1990 ntBASIC19.96■□□□□ 0.79
BDNFP23560 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
BDNFP23560 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
BDNFP23560 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC19.96■□□□□ 0.79
BDNFP23560 Telomerase-vert.1-201ENST00000363312 438 ntBASIC19.96■□□□□ 0.79
BDNFP23560 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.96■□□□□ 0.79
BDNFP23560 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
BDNFP23560 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC19.96■□□□□ 0.79
BDNFP23560 AL023284.2-201ENST00000405850 579 ntBASIC19.96■□□□□ 0.79
BDNFP23560 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms