Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC22.39■■□□□ 1.18
HMGB1P09429 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC22.39■■□□□ 1.18
HMGB1P09429 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
HMGB1P09429 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC22.39■■□□□ 1.18
HMGB1P09429 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
HMGB1P09429 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
HMGB1P09429 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
HMGB1P09429 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.17
HMGB1P09429 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC22.39■■□□□ 1.17
HMGB1P09429 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
HMGB1P09429 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC22.39■■□□□ 1.17
HMGB1P09429 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
HMGB1P09429 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
HMGB1P09429 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC22.39■■□□□ 1.17
HMGB1P09429 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
HMGB1P09429 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.17
HMGB1P09429 AL512353.2-201ENST00000448759 1962 ntBASIC22.39■■□□□ 1.17
HMGB1P09429 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC22.39■■□□□ 1.17
HMGB1P09429 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
HMGB1P09429 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
HMGB1P09429 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC22.39■■□□□ 1.17
HMGB1P09429 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
HMGB1P09429 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
HMGB1P09429 AC096733.2-201ENST00000609937 1394 ntBASIC22.38■■□□□ 1.17
HMGB1P09429 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
HMGB1P09429 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC22.38■■□□□ 1.17
HMGB1P09429 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
HMGB1P09429 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC22.38■■□□□ 1.17
HMGB1P09429 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC22.38■■□□□ 1.17
HMGB1P09429 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
HMGB1P09429 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC22.38■■□□□ 1.17
HMGB1P09429 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC22.38■■□□□ 1.17
HMGB1P09429 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
HMGB1P09429 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
HMGB1P09429 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC22.38■■□□□ 1.17
HMGB1P09429 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
HMGB1P09429 MIR718-201ENST00000390190 70 ntBASIC22.38■■□□□ 1.17
HMGB1P09429 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC22.38■■□□□ 1.17
HMGB1P09429 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC22.38■■□□□ 1.17
HMGB1P09429 Z99916.2-201ENST00000604037 246 ntBASIC22.38■■□□□ 1.17
HMGB1P09429 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
HMGB1P09429 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC22.38■■□□□ 1.17
HMGB1P09429 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
HMGB1P09429 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC22.38■■□□□ 1.17
HMGB1P09429 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC22.38■■□□□ 1.17
HMGB1P09429 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
HMGB1P09429 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
HMGB1P09429 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
HMGB1P09429 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
HMGB1P09429 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
HMGB1P09429 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
HMGB1P09429 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC22.37■■□□□ 1.17
HMGB1P09429 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
HMGB1P09429 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
HMGB1P09429 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC22.37■■□□□ 1.17
HMGB1P09429 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC22.37■■□□□ 1.17
HMGB1P09429 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
HMGB1P09429 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC22.37■■□□□ 1.17
HMGB1P09429 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
HMGB1P09429 MDFI-202ENST00000373050 809 ntTSL 2 BASIC22.37■■□□□ 1.17
HMGB1P09429 PENK-204ENST00000518770 863 ntTSL 2 BASIC22.37■■□□□ 1.17
HMGB1P09429 REXO2-216ENST00000544196 452 ntTSL 3 BASIC22.37■■□□□ 1.17
HMGB1P09429 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
HMGB1P09429 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC22.37■■□□□ 1.17
HMGB1P09429 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC22.37■■□□□ 1.17
HMGB1P09429 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC22.37■■□□□ 1.17
HMGB1P09429 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
HMGB1P09429 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC22.37■■□□□ 1.17
HMGB1P09429 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
HMGB1P09429 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC22.37■■□□□ 1.17
HMGB1P09429 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
HMGB1P09429 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC22.36■■□□□ 1.17
HMGB1P09429 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
HMGB1P09429 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC22.36■■□□□ 1.17
HMGB1P09429 AL355355.2-201ENST00000442321 338 ntBASIC22.36■■□□□ 1.17
HMGB1P09429 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC22.36■■□□□ 1.17
HMGB1P09429 AC008550.1-201ENST00000511500 884 ntBASIC22.36■■□□□ 1.17
HMGB1P09429 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC22.36■■□□□ 1.17
HMGB1P09429 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC22.36■■□□□ 1.17
HMGB1P09429 AP006294.2-201ENST00000641667 209 ntBASIC22.36■■□□□ 1.17
HMGB1P09429 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
HMGB1P09429 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
HMGB1P09429 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC22.36■■□□□ 1.17
HMGB1P09429 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
HMGB1P09429 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC22.35■■□□□ 1.17
HMGB1P09429 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
HMGB1P09429 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
HMGB1P09429 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
HMGB1P09429 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC22.35■■□□□ 1.17
HMGB1P09429 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC22.35■■□□□ 1.17
HMGB1P09429 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC22.35■■□□□ 1.17
HMGB1P09429 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC22.35■■□□□ 1.17
HMGB1P09429 HEIH-201ENST00000623091 1652 ntBASIC22.35■■□□□ 1.17
HMGB1P09429 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
HMGB1P09429 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC22.35■■□□□ 1.17
HMGB1P09429 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
HMGB1P09429 KRT8P32-201ENST00000512863 1461 ntBASIC22.34■■□□□ 1.17
HMGB1P09429 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC22.34■■□□□ 1.17
HMGB1P09429 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC22.34■■□□□ 1.17
HMGB1P09429 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms