Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 FP475955.4-201ENST00000623131 1990 ntBASIC22.17■■□□□ 1.14
COL2A1P02458 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC22.16■■□□□ 1.14
COL2A1P02458 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL2A1P02458 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
COL2A1P02458 MIR3180-1-201ENST00000580374 94 ntBASIC22.16■■□□□ 1.14
COL2A1P02458 MIR3180-3-201ENST00000584616 94 ntBASIC22.16■■□□□ 1.14
COL2A1P02458 AC011498.5-201ENST00000592027 486 ntBASIC22.16■■□□□ 1.14
COL2A1P02458 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL2A1P02458 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL2A1P02458 AL121672.3-201ENST00000608644 468 ntBASIC22.16■■□□□ 1.14
COL2A1P02458 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL2A1P02458 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
COL2A1P02458 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL2A1P02458 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC22.16■■□□□ 1.14
COL2A1P02458 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL2A1P02458 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL2A1P02458 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
COL2A1P02458 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL2A1P02458 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC22.15■■□□□ 1.14
COL2A1P02458 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC22.15■■□□□ 1.14
COL2A1P02458 MIR3180-4-201ENST00000582223 153 ntBASIC22.15■■□□□ 1.14
COL2A1P02458 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC22.15■■□□□ 1.14
COL2A1P02458 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC22.15■■□□□ 1.14
COL2A1P02458 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
COL2A1P02458 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
COL2A1P02458 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
COL2A1P02458 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC22.15■■□□□ 1.14
COL2A1P02458 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL2A1P02458 POLI-202ENST00000406285 2030 ntTSL 2 BASIC22.15■■□□□ 1.14
COL2A1P02458 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
COL2A1P02458 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC22.15■■□□□ 1.14
COL2A1P02458 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC22.15■■□□□ 1.14
COL2A1P02458 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL2A1P02458 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC22.15■■□□□ 1.14
COL2A1P02458 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
COL2A1P02458 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL2A1P02458 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL2A1P02458 AC016734.2-201ENST00000624325 1377 ntBASIC22.15■■□□□ 1.14
COL2A1P02458 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL2A1P02458 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
COL2A1P02458 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC22.15■■□□□ 1.14
COL2A1P02458 MIR564-202ENST00000385049 94 ntBASIC22.15■■□□□ 1.14
COL2A1P02458 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
COL2A1P02458 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL2A1P02458 TSSC2-201ENST00000450217 709 ntBASIC22.15■■□□□ 1.14
COL2A1P02458 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC22.15■■□□□ 1.14
COL2A1P02458 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC22.15■■□□□ 1.14
COL2A1P02458 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
COL2A1P02458 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC22.14■■□□□ 1.14
COL2A1P02458 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC22.14■■□□□ 1.14
COL2A1P02458 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
COL2A1P02458 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC22.14■■□□□ 1.14
COL2A1P02458 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
COL2A1P02458 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
COL2A1P02458 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC22.14■■□□□ 1.13
COL2A1P02458 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC22.14■■□□□ 1.13
COL2A1P02458 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC22.14■■□□□ 1.13
COL2A1P02458 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
COL2A1P02458 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC22.14■■□□□ 1.13
COL2A1P02458 KRT8P26-201ENST00000534154 1276 ntBASIC22.14■■□□□ 1.13
COL2A1P02458 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC22.14■■□□□ 1.13
COL2A1P02458 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC22.14■■□□□ 1.13
COL2A1P02458 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC22.14■■□□□ 1.13
COL2A1P02458 AC068587.9-201ENST00000641814 219 ntBASIC22.14■■□□□ 1.13
COL2A1P02458 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC22.14■■□□□ 1.13
COL2A1P02458 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
COL2A1P02458 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC22.14■■□□□ 1.13
COL2A1P02458 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
COL2A1P02458 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
COL2A1P02458 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
COL2A1P02458 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC22.13■■□□□ 1.13
COL2A1P02458 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
COL2A1P02458 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
COL2A1P02458 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
COL2A1P02458 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC22.13■■□□□ 1.13
COL2A1P02458 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC22.13■■□□□ 1.13
COL2A1P02458 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
COL2A1P02458 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC22.13■■□□□ 1.13
COL2A1P02458 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
COL2A1P02458 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC22.13■■□□□ 1.13
COL2A1P02458 AP002383.4-201ENST00000442518 975 ntBASIC22.13■■□□□ 1.13
COL2A1P02458 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC22.13■■□□□ 1.13
COL2A1P02458 BX276092.5-203ENST00000456199 560 ntBASIC22.13■■□□□ 1.13
COL2A1P02458 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC22.13■■□□□ 1.13
COL2A1P02458 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC22.13■■□□□ 1.13
COL2A1P02458 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
COL2A1P02458 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
COL2A1P02458 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
COL2A1P02458 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC22.13■■□□□ 1.13
COL2A1P02458 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
COL2A1P02458 AC034236.2-201ENST00000606662 1610 ntBASIC22.12■■□□□ 1.13
COL2A1P02458 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
COL2A1P02458 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
COL2A1P02458 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
COL2A1P02458 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
COL2A1P02458 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC22.12■■□□□ 1.13
COL2A1P02458 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
COL2A1P02458 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
COL2A1P02458 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC22.12■■□□□ 1.13
COL2A1P02458 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms