Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 RPL6-207ENST00000550238 338 ntTSL 57.35□□□□□ -1.233e-9■□□□□ 10.7
SMNDC1O75940 RPL6-205ENST00000549562 583 ntTSL 26.98□□□□□ -1.293e-9■□□□□ 10.7
SMNDC1O75940 RPL6-202ENST00000424576 1074 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.323e-9■□□□□ 10.7
SMNDC1O75940 RPL6-204ENST00000548343 612 ntTSL 26.71□□□□□ -1.343e-9■□□□□ 10.7
SMNDC1O75940 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.373e-9■□□□□ 10.7
SMNDC1O75940 RPL6-210ENST00000551291 700 ntTSL 36.2□□□□□ -1.423e-9■□□□□ 10.7
SMNDC1O75940 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC6.03□□□□□ -1.443e-9■□□□□ 10.7
SMNDC1O75940 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.53e-9■□□□□ 10.7
SMNDC1O75940 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.653e-9■□□□□ 10.7
SMNDC1O75940 UBAP2-209ENST00000474372 1339 ntTSL 512.4□□□□□ -0.421e-63■□□□□ 10.7
SMNDC1O75940 UBAP2-211ENST00000488443 492 ntTSL 512.11□□□□□ -0.471e-63■□□□□ 10.7
SMNDC1O75940 UBAP2-205ENST00000379239 2513 ntTSL 2 BASIC11.83□□□□□ -0.521e-63■□□□□ 10.7
SMNDC1O75940 SNORD121B-201ENST00000458838 81 ntBASIC5.55□□□□□ -1.521e-63■□□□□ 10.7
SMNDC1O75940 GNL3-208ENST00000479230 547 ntTSL 410.02□□□□□ -0.812e-14■□□□□ 10.7
SMNDC1O75940 GNL3-210ENST00000492349 729 ntTSL 210.02□□□□□ -0.812e-14■□□□□ 10.7
SMNDC1O75940 GNL3-205ENST00000468146 533 ntTSL 49.92□□□□□ -0.822e-14■□□□□ 10.7
SMNDC1O75940 NCAPD2-213ENST00000545732 543 ntTSL 56.96□□□□□ -1.38e-10■□□□□ 10.7
SMNDC1O75940 CCNB1IP1-206ENST00000437553 1686 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.611e-323■□□□□ 10.7
SMNDC1O75940 CCNB1IP1-204ENST00000398163 1604 ntAPPRIS P1 TSL 2 BASIC10.29□□□□□ -0.761e-323■□□□□ 10.7
SMNDC1O75940 CCNB1IP1-203ENST00000398160 1613 ntAPPRIS P1 TSL 2 BASIC9.99□□□□□ -0.811e-323■□□□□ 10.7
SMNDC1O75940 CCNB1IP1-205ENST00000398169 1631 ntAPPRIS P1 TSL 2 BASIC9.81□□□□□ -0.841e-323■□□□□ 10.7
SMNDC1O75940 CCNB1IP1-216ENST00000557665 1331 ntTSL 59.51□□□□□ -0.891e-323■□□□□ 10.7
SMNDC1O75940 CCNB1IP1-208ENST00000553516 669 ntTSL 29.08□□□□□ -0.961e-323■□□□□ 10.7
SMNDC1O75940 CCNB1IP1-202ENST00000358932 1479 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.991e-323■□□□□ 10.7
SMNDC1O75940 CCNB1IP1-201ENST00000353689 1305 ntAPPRIS P1 TSL 5 BASIC8.31□□□□□ -1.081e-323■□□□□ 10.7
SMNDC1O75940 SNORA79B-201ENST00000410557 148 ntBASIC8.23□□□□□ -1.091e-323■□□□□ 10.7
SMNDC1O75940 CCNB1IP1-214ENST00000556854 1294 ntTSL 57.4□□□□□ -1.221e-323■□□□□ 10.7
SMNDC1O75940 CCNB1IP1-213ENST00000556563 646 ntTSL 36.88□□□□□ -1.311e-323■□□□□ 10.7
SMNDC1O75940 CCNB1IP1-211ENST00000555348 505 ntTSL 44.95□□□□□ -1.621e-323■□□□□ 10.7
SMNDC1O75940 CCNB1IP1-207ENST00000553291 392 ntTSL 33.69□□□□□ -1.821e-323■□□□□ 10.7
SMNDC1O75940 DDIT4-202ENST00000471240 521 ntTSL 219.33■□□□□ 0.687e-10■□□□□ 10.7
SMNDC1O75940 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.637e-10■□□□□ 10.7
SMNDC1O75940 DDIT4-203ENST00000473155 753 ntTSL 1 (best)18.79■□□□□ 0.67e-10■□□□□ 10.7
SMNDC1O75940 LUC7L-218ENST00000494366 668 ntTSL 316.77■□□□□ 0.283e-6■□□□□ 10.6
SMNDC1O75940 LUC7L-203ENST00000397780 1335 ntTSL 5 BASIC11.3□□□□□ -0.63e-6■□□□□ 10.6
SMNDC1O75940 LUC7L-216ENST00000469109 950 ntTSL 1 (best)10.95□□□□□ -0.663e-6■□□□□ 10.6
SMNDC1O75940 LUC7L-208ENST00000428363 498 ntTSL 510.4□□□□□ -0.743e-6■□□□□ 10.6
SMNDC1O75940 LUC7L-212ENST00000443357 833 ntTSL 28.39□□□□□ -1.073e-6■□□□□ 10.6
SMNDC1O75940 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.793e-9■□□□□ 10.6
SMNDC1O75940 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.75■□□□□ 0.753e-9■□□□□ 10.6
SMNDC1O75940 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.753e-9■□□□□ 10.6
SMNDC1O75940 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC19.65■□□□□ 0.743e-9■□□□□ 10.6
SMNDC1O75940 POLD2-206ENST00000436844 854 ntTSL 516.33■□□□□ 0.23e-9■□□□□ 10.6
SMNDC1O75940 PGM3-201ENST00000283977 2219 ntTSL 5 BASIC13.83□□□□□ -0.23e-9■□□□□ 10.6
SMNDC1O75940 PGM3-205ENST00000506587 1971 ntTSL 2 BASIC9.32□□□□□ -0.923e-9■□□□□ 10.6
SMNDC1O75940 PGM3-209ENST00000509219 753 ntTSL 57.76□□□□□ -1.173e-9■□□□□ 10.6
SMNDC1O75940 PGM3-212ENST00000513973 6107 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.183e-9■□□□□ 10.6
SMNDC1O75940 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC6.69□□□□□ -1.343e-9■□□□□ 10.6
SMNDC1O75940 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC5.5□□□□□ -1.533e-9■□□□□ 10.6
SMNDC1O75940 PGM3-206ENST00000507404 225 ntTSL 55.38□□□□□ -1.553e-9■□□□□ 10.6
SMNDC1O75940 POLD2-205ENST00000436400 249 ntTSL 34.24□□□□□ -1.733e-9■□□□□ 10.6
SMNDC1O75940 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.171e-6■□□□□ 10.6
SMNDC1O75940 PRPSAP1-212ENST00000592474 1898 nt9.99□□□□□ -0.811e-6■□□□□ 10.6
SMNDC1O75940 PRPSAP1-201ENST00000324684 1678 ntTSL 2 BASIC9.61□□□□□ -0.871e-6■□□□□ 10.6
SMNDC1O75940 PRPSAP1-203ENST00000435555 916 ntTSL 59.02□□□□□ -0.971e-6■□□□□ 10.6
SMNDC1O75940 PRPSAP1-208ENST00000488339 443 ntTSL 29.02□□□□□ -0.971e-6■□□□□ 10.6
SMNDC1O75940 PRPSAP1-211ENST00000588364 1004 ntTSL 58.57□□□□□ -1.041e-6■□□□□ 10.6
SMNDC1O75940 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 25e-7■□□□□ 10.6
SMNDC1O75940 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC25.54■■□□□ 1.685e-7■□□□□ 10.6
SMNDC1O75940 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC24.81■■□□□ 1.565e-7■□□□□ 10.6
SMNDC1O75940 TAZ-223ENST00000620808 773 ntTSL 523.5■■□□□ 1.355e-7■□□□□ 10.6
SMNDC1O75940 TAZ-217ENST00000613634 1109 ntTSL 523.5■■□□□ 1.355e-7■□□□□ 10.6
SMNDC1O75940 TAZ-219ENST00000615658 1322 ntTSL 222.84■■□□□ 1.255e-7■□□□□ 10.6
SMNDC1O75940 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC22.46■■□□□ 1.195e-7■□□□□ 10.6
SMNDC1O75940 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC21.66■■□□□ 1.065e-7■□□□□ 10.6
SMNDC1O75940 TAZ-214ENST00000612012 877 ntTSL 520.87■□□□□ 0.935e-7■□□□□ 10.6
SMNDC1O75940 TAZ-220ENST00000615986 1900 ntTSL 220.35■□□□□ 0.855e-7■□□□□ 10.6
SMNDC1O75940 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.625e-7■□□□□ 10.6
SMNDC1O75940 FAM229A-202ENST00000416512 2759 ntTSL 1 (best)18.89■□□□□ 0.615e-7■□□□□ 10.6
SMNDC1O75940 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC18.52■□□□□ 0.565e-7■□□□□ 10.6
SMNDC1O75940 TAZ-211ENST00000494912 2286 ntTSL 218.4■□□□□ 0.545e-7■□□□□ 10.6
SMNDC1O75940 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.525e-7■□□□□ 10.6
SMNDC1O75940 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.415e-7■□□□□ 10.6
SMNDC1O75940 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.34■□□□□ 0.375e-7■□□□□ 10.6
SMNDC1O75940 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.24■□□□□ 0.355e-7■□□□□ 10.6
SMNDC1O75940 TAZ-204ENST00000470127 272 ntTSL 516.87■□□□□ 0.295e-7■□□□□ 10.6
SMNDC1O75940 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.19■□□□□ 0.185e-7■□□□□ 10.6
SMNDC1O75940 SIVA1-205ENST00000553819 856 ntTSL 315.9■□□□□ 0.145e-7■□□□□ 10.6
SMNDC1O75940 TAZ-202ENST00000426231 864 ntTSL 515.31■□□□□ 0.045e-7■□□□□ 10.6
SMNDC1O75940 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC14.66□□□□□ -0.065e-7■□□□□ 10.6
SMNDC1O75940 MYO19-204ENST00000610992 5743 ntTSL 214.3□□□□□ -0.125e-7■□□□□ 10.6
SMNDC1O75940 FAM229A-201ENST00000415596 446 ntTSL 313.57□□□□□ -0.245e-7■□□□□ 10.6
SMNDC1O75940 MYO19-203ENST00000610930 3271 ntTSL 5 BASIC13.3□□□□□ -0.285e-7■□□□□ 10.6
SMNDC1O75940 MYO19-213ENST00000614623 4054 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.415e-7■□□□□ 10.6
SMNDC1O75940 MYO19-226ENST00000621550 4299 ntTSL 512.32□□□□□ -0.445e-7■□□□□ 10.6
SMNDC1O75940 SIVA1-208ENST00000556431 4142 ntTSL 212.18□□□□□ -0.465e-7■□□□□ 10.6
SMNDC1O75940 TAZ-212ENST00000498029 537 ntTSL 211.23□□□□□ -0.615e-7■□□□□ 10.6
SMNDC1O75940 TAZ-203ENST00000439735 567 ntTSL 59.92□□□□□ -0.825e-7■□□□□ 10.6
SMNDC1O75940 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC6.91□□□□□ -1.35e-7■□□□□ 10.6
SMNDC1O75940 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.445e-7■□□□□ 10.6
SMNDC1O75940 RNU4-46P-201ENST00000410818 138 ntBASIC5.51□□□□□ -1.535e-7■□□□□ 10.6
SMNDC1O75940 FASN-208ENST00000635733 100 ntTSL 57.65□□□□□ -1.187e-12■□□□□ 10.6
SMNDC1O75940 UBAP2L-214ENST00000475373 838 ntTSL 28.42□□□□□ -1.063e-37■□□□□ 10.6
SMNDC1O75940 SNORA58B-201ENST00000364259 136 ntBASIC4.73□□□□□ -1.653e-37■□□□□ 10.6
SMNDC1O75940 DCUN1D5-210ENST00000531571 1535 ntTSL 522.83■■□□□ 1.257e-10■□□□□ 10.6
SMNDC1O75940 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.157e-10■□□□□ 10.6
SMNDC1O75940 DCUN1D5-204ENST00000527576 790 ntTSL 520.4■□□□□ 0.867e-10■□□□□ 10.6
SMNDC1O75940 DCUN1D5-207ENST00000529281 1310 ntTSL 215.19■□□□□ 0.027e-10■□□□□ 10.6
SMNDC1O75940 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC14.46□□□□□ -0.097e-10■□□□□ 10.6
SMNDC1O75940 DCUN1D5-208ENST00000529294 727 ntTSL 312.17□□□□□ -0.467e-10■□□□□ 10.6
Retrieved 100 of 11,362 protein–RNA pairs in 268.7 ms