Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SDC3O75056 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.54■□□□□ 0.56
SDC3O75056 TSPY21P-201ENST00000433481 731 ntBASIC18.54■□□□□ 0.56
SDC3O75056 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.54■□□□□ 0.56
SDC3O75056 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.54■□□□□ 0.56
SDC3O75056 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC18.54■□□□□ 0.56
SDC3O75056 AC024243.1-201ENST00000609234 778 ntBASIC18.54■□□□□ 0.56
SDC3O75056 AC012313.10-201ENST00000623509 926 ntBASIC18.54■□□□□ 0.56
SDC3O75056 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SDC3O75056 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
SDC3O75056 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.54■□□□□ 0.56
SDC3O75056 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
SDC3O75056 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC18.54■□□□□ 0.56
SDC3O75056 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SDC3O75056 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SDC3O75056 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SDC3O75056 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.54■□□□□ 0.56
SDC3O75056 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.54■□□□□ 0.56
SDC3O75056 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.54■□□□□ 0.56
SDC3O75056 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.54■□□□□ 0.56
SDC3O75056 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SDC3O75056 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.53■□□□□ 0.56
SDC3O75056 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SDC3O75056 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
SDC3O75056 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.53■□□□□ 0.56
SDC3O75056 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SDC3O75056 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SDC3O75056 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
SDC3O75056 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.53■□□□□ 0.56
SDC3O75056 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
SDC3O75056 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SDC3O75056 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SDC3O75056 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.53■□□□□ 0.56
SDC3O75056 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SDC3O75056 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
SDC3O75056 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
SDC3O75056 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.53■□□□□ 0.56
SDC3O75056 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SDC3O75056 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SDC3O75056 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
SDC3O75056 SPDYE13P-201ENST00000445314 798 ntBASIC18.53■□□□□ 0.56
SDC3O75056 AC092597.1-201ENST00000487352 616 ntBASIC18.53■□□□□ 0.56
SDC3O75056 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SDC3O75056 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC18.53■□□□□ 0.56
SDC3O75056 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.53■□□□□ 0.56
SDC3O75056 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SDC3O75056 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.53■□□□□ 0.56
SDC3O75056 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SDC3O75056 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.52■□□□□ 0.56
SDC3O75056 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SDC3O75056 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SDC3O75056 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
SDC3O75056 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.52■□□□□ 0.56
SDC3O75056 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SDC3O75056 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.52■□□□□ 0.56
SDC3O75056 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SDC3O75056 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.52■□□□□ 0.56
SDC3O75056 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SDC3O75056 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SDC3O75056 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.52■□□□□ 0.56
SDC3O75056 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SDC3O75056 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.52■□□□□ 0.56
SDC3O75056 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.52■□□□□ 0.56
SDC3O75056 RASA4DP-201ENST00000460726 1199 ntBASIC18.52■□□□□ 0.56
SDC3O75056 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SDC3O75056 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
SDC3O75056 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SDC3O75056 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SDC3O75056 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SDC3O75056 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.52■□□□□ 0.55
SDC3O75056 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SDC3O75056 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SDC3O75056 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SDC3O75056 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SDC3O75056 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SDC3O75056 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
SDC3O75056 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SDC3O75056 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SDC3O75056 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SDC3O75056 AL023284.2-201ENST00000405850 579 ntBASIC18.51■□□□□ 0.55
SDC3O75056 AL450487.1-201ENST00000426799 995 ntBASIC18.51■□□□□ 0.55
SDC3O75056 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
SDC3O75056 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SDC3O75056 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
SDC3O75056 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SDC3O75056 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SDC3O75056 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
SDC3O75056 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SDC3O75056 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.5■□□□□ 0.55
SDC3O75056 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
SDC3O75056 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
SDC3O75056 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
SDC3O75056 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SDC3O75056 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.5■□□□□ 0.55
SDC3O75056 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.5■□□□□ 0.55
SDC3O75056 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.5■□□□□ 0.55
SDC3O75056 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SDC3O75056 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SDC3O75056 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SDC3O75056 HBZP1-201ENST00000354915 429 ntBASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms