Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LMX1BO60663 TSPY15P-201ENST00000457163 923 ntBASIC16.69■□□□□ 0.26
LMX1BO60663 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC16.69■□□□□ 0.26
LMX1BO60663 PENK-204ENST00000518770 863 ntTSL 2 BASIC16.69■□□□□ 0.26
LMX1BO60663 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC16.69■□□□□ 0.26
LMX1BO60663 TK2-213ENST00000563369 882 ntTSL 5 BASIC16.69■□□□□ 0.26
LMX1BO60663 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC16.69■□□□□ 0.26
LMX1BO60663 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC16.69■□□□□ 0.26
LMX1BO60663 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC16.69■□□□□ 0.26
LMX1BO60663 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
LMX1BO60663 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.69■□□□□ 0.26
LMX1BO60663 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LMX1BO60663 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LMX1BO60663 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
LMX1BO60663 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LMX1BO60663 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC16.69■□□□□ 0.26
LMX1BO60663 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC16.69■□□□□ 0.26
LMX1BO60663 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LMX1BO60663 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC16.69■□□□□ 0.26
LMX1BO60663 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1BO60663 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1BO60663 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1BO60663 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1BO60663 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC16.68■□□□□ 0.26
LMX1BO60663 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC16.68■□□□□ 0.26
LMX1BO60663 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC16.68■□□□□ 0.26
LMX1BO60663 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC16.68■□□□□ 0.26
LMX1BO60663 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC16.68■□□□□ 0.26
LMX1BO60663 AL355075.4-201ENST00000554988 638 ntBASIC16.68■□□□□ 0.26
LMX1BO60663 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1BO60663 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC16.68■□□□□ 0.26
LMX1BO60663 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1BO60663 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC16.68■□□□□ 0.26
LMX1BO60663 AC097493.4-201ENST00000641197 219 ntBASIC16.68■□□□□ 0.26
LMX1BO60663 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1BO60663 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1BO60663 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1BO60663 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1BO60663 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16.68■□□□□ 0.26
LMX1BO60663 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1BO60663 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
LMX1BO60663 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC16.68■□□□□ 0.26
LMX1BO60663 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
LMX1BO60663 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC16.68■□□□□ 0.26
LMX1BO60663 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1BO60663 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LMX1BO60663 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC16.67■□□□□ 0.26
LMX1BO60663 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1BO60663 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
LMX1BO60663 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1BO60663 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1BO60663 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC16.67■□□□□ 0.26
LMX1BO60663 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1BO60663 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1BO60663 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1BO60663 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1BO60663 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1BO60663 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
LMX1BO60663 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC16.67■□□□□ 0.26
LMX1BO60663 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC16.67■□□□□ 0.26
LMX1BO60663 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC16.67■□□□□ 0.26
LMX1BO60663 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC16.67■□□□□ 0.26
LMX1BO60663 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
LMX1BO60663 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1BO60663 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1BO60663 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1BO60663 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
LMX1BO60663 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1BO60663 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1BO60663 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC16.67■□□□□ 0.26
LMX1BO60663 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1BO60663 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1BO60663 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1BO60663 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1BO60663 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1BO60663 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LMX1BO60663 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1BO60663 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1BO60663 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1BO60663 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC16.66■□□□□ 0.26
LMX1BO60663 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1BO60663 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1BO60663 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1BO60663 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1BO60663 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
LMX1BO60663 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC16.66■□□□□ 0.26
LMX1BO60663 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1BO60663 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC16.66■□□□□ 0.26
LMX1BO60663 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1BO60663 KRT18P16-201ENST00000510337 1294 ntBASIC16.66■□□□□ 0.26
LMX1BO60663 PPOX-219ENST00000544598 813 ntTSL 2 BASIC16.66■□□□□ 0.26
LMX1BO60663 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1BO60663 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC16.66■□□□□ 0.26
LMX1BO60663 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1BO60663 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
LMX1BO60663 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC16.66■□□□□ 0.26
LMX1BO60663 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC16.66■□□□□ 0.26
LMX1BO60663 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LMX1BO60663 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC16.66■□□□□ 0.26
LMX1BO60663 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms