Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
TRAV1-1A0A0B4J248 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
TRAV1-1A0A0B4J248 AD000864.1-201ENST00000624076 2295 ntBASIC14.83□□□□□ -0.03
TRAV1-1A0A0B4J248 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
TRAV1-1A0A0B4J248 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
TRAV1-1A0A0B4J248 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
TRAV1-1A0A0B4J248 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC14.83□□□□□ -0.03
TRAV1-1A0A0B4J248 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC14.83□□□□□ -0.03
TRAV1-1A0A0B4J248 SNAI3-AS1-205ENST00000568633 2096 ntBASIC14.83□□□□□ -0.03
TRAV1-1A0A0B4J248 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
TRAV1-1A0A0B4J248 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
TRAV1-1A0A0B4J248 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 NME1-207ENST00000480143 964 ntTSL 2 BASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 AC100791.3-201ENST00000617619 330 ntBASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 AC105020.6-201ENST00000621523 1217 ntBASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 AC106820.2-201ENST00000563775 3264 ntBASIC14.83□□□□□ -0.04
TRAV1-1A0A0B4J248 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 AC080080.1-201ENST00000625121 2420 ntBASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 MCRIP2P1-201ENST00000394346 511 ntBASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 PBX1-209ENST00000485769 834 ntTSL 2 BASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 BRWD1-AS2-201ENST00000603064 1028 ntBASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 AC108860.2-201ENST00000562760 2183 ntBASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC14.82□□□□□ -0.04
TRAV1-1A0A0B4J248 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 NARF-204ENST00000390006 1766 ntTSL 2 BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 RASA4CP-201ENST00000424092 1398 ntBASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms