Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 MIR448-201ENST00000362131 111 ntBASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 RNU6-460P-201ENST00000391158 108 ntBASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 AL355497.1-201ENST00000406262 551 ntBASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 RNU6-581P-201ENST00000516214 105 ntBASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 AP001328.1-201ENST00000528550 176 ntBASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 MTND5P34-201ENST00000568888 325 ntBASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 MIR3646-201ENST00000578301 84 ntBASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 AC011471.1-201ENST00000585766 187 ntBASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 AL391903.3-201ENST00000612158 163 ntBASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 MIR6500-201ENST00000622700 86 ntBASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 SNORD98-201ENST00000636377 67 ntBASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 MIR6844-201ENST00000637122 62 ntBASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 AF127577.6-201ENST00000623352 2191 ntBASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC4.69□□□□□ -1.66
SH3RF1Q7Z6J0 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SH3RF1Q7Z6J0 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SH3RF1Q7Z6J0 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
SH3RF1Q7Z6J0 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SH3RF1Q7Z6J0 SNORA7.2-201ENST00000364446 145 ntBASIC4.68□□□□□ -1.66
SH3RF1Q7Z6J0 Y_RNA.415-201ENST00000384012 112 ntBASIC4.68□□□□□ -1.66
SH3RF1Q7Z6J0 RNU6-643P-201ENST00000384018 107 ntBASIC4.68□□□□□ -1.66
SH3RF1Q7Z6J0 SNORA72.4-201ENST00000384174 132 ntBASIC4.68□□□□□ -1.66
SH3RF1Q7Z6J0 MIR483-201ENST00000385070 76 ntBASIC4.68□□□□□ -1.66
SH3RF1Q7Z6J0 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
SH3RF1Q7Z6J0 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC4.68□□□□□ -1.66
SH3RF1Q7Z6J0 AL031003.1-201ENST00000404229 172 ntBASIC4.68□□□□□ -1.66
SH3RF1Q7Z6J0 RNA5SP306-201ENST00000411087 107 ntBASIC4.68□□□□□ -1.66
SH3RF1Q7Z6J0 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC4.68□□□□□ -1.66
SH3RF1Q7Z6J0 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC4.68□□□□□ -1.66
SH3RF1Q7Z6J0 S100A11P1-201ENST00000477525 312 ntBASIC4.68□□□□□ -1.66
SH3RF1Q7Z6J0 RPS29P19-201ENST00000479709 171 ntBASIC4.68□□□□□ -1.66
SH3RF1Q7Z6J0 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC4.68□□□□□ -1.66
SH3RF1Q7Z6J0 RNU2-56P-201ENST00000516826 190 ntBASIC4.68□□□□□ -1.66
SH3RF1Q7Z6J0 NDUFA5P6-201ENST00000542110 379 ntBASIC4.68□□□□□ -1.66
SH3RF1Q7Z6J0 POC1B-211ENST00000549504 581 ntTSL 5 BASIC4.68□□□□□ -1.66
SH3RF1Q7Z6J0 AL391813.1-201ENST00000603098 260 ntBASIC4.68□□□□□ -1.66
SH3RF1Q7Z6J0 AC012314.7-201ENST00000619693 93 ntBASIC4.68□□□□□ -1.66
SH3RF1Q7Z6J0 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
SH3RF1Q7Z6J0 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SH3RF1Q7Z6J0 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SH3RF1Q7Z6J0 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
SH3RF1Q7Z6J0 RNU6-407P-201ENST00000365280 104 ntBASIC4.67□□□□□ -1.66
SH3RF1Q7Z6J0 RNU6-487P-201ENST00000365430 104 ntBASIC4.67□□□□□ -1.66
SH3RF1Q7Z6J0 MIR15B-201ENST00000385045 98 ntBASIC4.67□□□□□ -1.66
SH3RF1Q7Z6J0 RNA5SP104-201ENST00000410989 118 ntBASIC4.67□□□□□ -1.66
SH3RF1Q7Z6J0 RN7SKP284-201ENST00000411002 343 ntBASIC4.67□□□□□ -1.66
SH3RF1Q7Z6J0 AL158823.1-201ENST00000418441 478 ntBASIC4.67□□□□□ -1.66
SH3RF1Q7Z6J0 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.67□□□□□ -1.66
SH3RF1Q7Z6J0 AC245047.8-201ENST00000456455 284 ntBASIC4.67□□□□□ -1.66
SH3RF1Q7Z6J0 RNU6-453P-201ENST00000516819 85 ntBASIC4.67□□□□□ -1.66
SH3RF1Q7Z6J0 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.67□□□□□ -1.66
SH3RF1Q7Z6J0 AC027176.1-201ENST00000560204 514 ntBASIC4.67□□□□□ -1.66
SH3RF1Q7Z6J0 MIR3914-2-201ENST00000637339 95 ntBASIC4.67□□□□□ -1.66
SH3RF1Q7Z6J0 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SH3RF1Q7Z6J0 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
SH3RF1Q7Z6J0 NEAT1-202ENST00000501122 22743 ntBASIC4.67□□□□□ -1.66
SH3RF1Q7Z6J0 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SH3RF1Q7Z6J0 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SH3RF1Q7Z6J0 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 AC006971.1-201ENST00000407916 4486 ntBASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 RNU6-454P-201ENST00000364292 107 ntBASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 RNU6-969P-201ENST00000383900 105 ntBASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 MIR526A2-201ENST00000390198 65 ntBASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 RNA5SP39-201ENST00000411245 120 ntBASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 MTCO1P44-201ENST00000441935 243 ntBASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 RPL31P41-201ENST00000477967 372 ntBASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 AC103975.1-201ENST00000482506 483 ntBASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 MIR3923-201ENST00000579521 83 ntBASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 MIR5688-201ENST00000580619 83 ntBASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 SNORD11B-201ENST00000607707 90 ntBASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
SH3RF1Q7Z6J0 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.65□□□□□ -1.66
SH3RF1Q7Z6J0 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.65□□□□□ -1.66
SH3RF1Q7Z6J0 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.65□□□□□ -1.66
SH3RF1Q7Z6J0 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms