Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MCFD2P1-201ENST00000417812 300 ntBASIC3.25□□□□□ -1.89
SMARCA1P28370 AC008267.5-201ENST00000424928 265 ntBASIC3.25□□□□□ -1.89
SMARCA1P28370 PTGES3P4-201ENST00000426243 356 ntBASIC3.25□□□□□ -1.89
SMARCA1P28370 MTND4P19-201ENST00000446659 478 ntBASIC3.25□□□□□ -1.89
SMARCA1P28370 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SMARCA1P28370 AP001486.1-201ENST00000463339 476 ntBASIC3.25□□□□□ -1.89
SMARCA1P28370 AL049873.1-201ENST00000480540 376 ntBASIC3.25□□□□□ -1.89
SMARCA1P28370 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC3.25□□□□□ -1.89
SMARCA1P28370 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.25□□□□□ -1.89
SMARCA1P28370 MIR5701-3-201ENST00000578890 82 ntBASIC3.25□□□□□ -1.89
SMARCA1P28370 MIR5701-1-201ENST00000585138 82 ntBASIC3.25□□□□□ -1.89
SMARCA1P28370 AC005034.5-201ENST00000604219 466 ntBASIC3.25□□□□□ -1.89
SMARCA1P28370 MIR5701-2-201ENST00000615634 82 ntBASIC3.25□□□□□ -1.89
SMARCA1P28370 AC006386.2-201ENST00000624491 75 ntBASIC3.25□□□□□ -1.89
SMARCA1P28370 AC012005.1-201ENST00000624575 75 ntBASIC3.25□□□□□ -1.89
SMARCA1P28370 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.25□□□□□ -1.89
SMARCA1P28370 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.25□□□□□ -1.89
SMARCA1P28370 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
SMARCA1P28370 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.24□□□□□ -1.89
SMARCA1P28370 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.24□□□□□ -1.89
SMARCA1P28370 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.24□□□□□ -1.89
SMARCA1P28370 AL161431.1-201ENST00000618966 4205 ntBASIC3.24□□□□□ -1.89
SMARCA1P28370 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
SMARCA1P28370 AL160004.2-201ENST00000432935 350 ntBASIC3.24□□□□□ -1.89
SMARCA1P28370 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.24□□□□□ -1.89
SMARCA1P28370 GSTA11P-201ENST00000452866 669 ntBASIC3.24□□□□□ -1.89
SMARCA1P28370 AC105758.1-201ENST00000506038 399 ntBASIC3.24□□□□□ -1.89
SMARCA1P28370 RNU6-988P-201ENST00000519081 107 ntBASIC3.24□□□□□ -1.89
SMARCA1P28370 CKS1BP7-201ENST00000522230 235 ntBASIC3.24□□□□□ -1.89
SMARCA1P28370 MRPS36P4-201ENST00000534436 298 ntBASIC3.24□□□□□ -1.89
SMARCA1P28370 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.24□□□□□ -1.89
SMARCA1P28370 AC090897.2-201ENST00000581715 130 ntBASIC3.24□□□□□ -1.89
SMARCA1P28370 AC060766.3-201ENST00000591442 263 ntBASIC3.24□□□□□ -1.89
SMARCA1P28370 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.24□□□□□ -1.89
SMARCA1P28370 AL360085.1-201ENST00000604713 532 ntBASIC3.24□□□□□ -1.89
SMARCA1P28370 AL137843.1-201ENST00000605078 385 ntBASIC3.24□□□□□ -1.89
SMARCA1P28370 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.24□□□□□ -1.89
SMARCA1P28370 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
SMARCA1P28370 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.24□□□□□ -1.89
SMARCA1P28370 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
SMARCA1P28370 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.23□□□□□ -1.89
SMARCA1P28370 HAUS6P2-201ENST00000433254 2404 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 MTND4P1-201ENST00000457501 1466 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 SNORD56.5-201ENST00000364281 72 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 SNORA63C-201ENST00000364578 129 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 RNU6-487P-201ENST00000365430 104 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 Y_RNA.428-201ENST00000384078 102 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 MIR606-201ENST00000384851 96 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 RPL21P75-201ENST00000396599 483 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 RPL21P28-201ENST00000401418 483 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 RNU6-1140P-201ENST00000410517 106 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 RNA5SP21-201ENST00000410917 96 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 RPL23AP95-201ENST00000426806 265 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 AC087499.2-201ENST00000432861 149 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 AC105272.1-201ENST00000438604 198 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC3.23□□□□□ -1.89
SMARCA1P28370 RPL21P39-201ENST00000463605 483 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 RPL30P12-201ENST00000474666 353 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 RN7SL499P-201ENST00000481141 276 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 AC087190.1-201ENST00000484462 480 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 AC093591.1-201ENST00000491435 481 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 RPL21P16-201ENST00000495531 483 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 RNU5B-3P-201ENST00000516601 115 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 SNORD116.3-201ENST00000517176 78 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 MIR3605-201ENST00000583214 100 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 B3GNTL1P2-201ENST00000603673 288 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 AC006157.1-201ENST00000611750 366 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 MIR7106-201ENST00000612419 65 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC3.23□□□□□ -1.89
SMARCA1P28370 AC083806.3-201ENST00000614016 455 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC3.23□□□□□ -1.89
SMARCA1P28370 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
SMARCA1P28370 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
SMARCA1P28370 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
SMARCA1P28370 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.22□□□□□ -1.89
SMARCA1P28370 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
SMARCA1P28370 RNU6-1032P-201ENST00000384100 107 ntBASIC3.22□□□□□ -1.89
SMARCA1P28370 RNU6-748P-201ENST00000384648 107 ntBASIC3.22□□□□□ -1.89
SMARCA1P28370 Y_RNA.577-201ENST00000384794 101 ntBASIC3.22□□□□□ -1.89
SMARCA1P28370 RNA5SP390-201ENST00000410191 113 ntBASIC3.22□□□□□ -1.89
SMARCA1P28370 RNU6-1156P-201ENST00000410365 100 ntBASIC3.22□□□□□ -1.89
SMARCA1P28370 MTND2P23-201ENST00000422990 651 ntBASIC3.22□□□□□ -1.89
SMARCA1P28370 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.22□□□□□ -1.89
SMARCA1P28370 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.22□□□□□ -1.89
SMARCA1P28370 RPL30P1-201ENST00000488676 339 ntBASIC3.22□□□□□ -1.89
SMARCA1P28370 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC3.22□□□□□ -1.89
SMARCA1P28370 SCARNA11.3-201ENST00000517276 130 ntBASIC3.22□□□□□ -1.89
SMARCA1P28370 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC3.22□□□□□ -1.89
SMARCA1P28370 HSPE1P20-201ENST00000538133 289 ntBASIC3.22□□□□□ -1.89
SMARCA1P28370 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC3.22□□□□□ -1.89
SMARCA1P28370 RPL23AP88-201ENST00000605759 454 ntBASIC3.22□□□□□ -1.89
SMARCA1P28370 SNORA43.4-201ENST00000629559 138 ntBASIC3.22□□□□□ -1.89
SMARCA1P28370 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
SMARCA1P28370 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.22□□□□□ -1.89
SMARCA1P28370 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.22□□□□□ -1.89
SMARCA1P28370 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.21□□□□□ -1.9
SMARCA1P28370 SNORA68.1-201ENST00000364537 132 ntBASIC3.21□□□□□ -1.9
SMARCA1P28370 RNU6-738P-201ENST00000384531 106 ntBASIC3.21□□□□□ -1.9
SMARCA1P28370 AL138827.1-201ENST00000402666 306 ntBASIC3.21□□□□□ -1.9
SMARCA1P28370 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 145.6 ms