RNA–Protein interactions for RNA: ENST00000410517.1

RNU6-1140P-201, Transcript of RNA, U6 small nuclear 1140, pseudogene, humanhuman

BASIC

Gene RNU6-1140P, Length 106 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-1140P-201ENST00000410517 AEBP2Q6ZN18 517 aaPredicted RBP19.08■□□□□ 0.64
RNU6-1140P-201ENST00000410517 CHIC1Q5VXU3 224 aa17.84■□□□□ 0.45
RNU6-1140P-201ENST00000410517 SENP3Q9H4L4 574 aaPredicted RBP16.36■□□□□ 0.21
RNU6-1140P-201ENST00000410517 PHF23Q9BUL5 403 aaPredicted RBP16.09■□□□□ 0.17
RNU6-1140P-201ENST00000410517 FOXD1Q16676 465 aa15.32■□□□□ 0.04
RNU6-1140P-201ENST00000410517 POTEDQ86YR6 584 aa15.12■□□□□ 0.01
RNU6-1140P-201ENST00000410517 MSH5O43196 834 aa14.54□□□□□ -0.08
RNU6-1140P-201ENST00000410517 PIAS4Q8N2W9 510 aaPredicted RBP14.21□□□□□ -0.13
RNU6-1140P-201ENST00000410517 PPP6R1Q9UPN7 881 aa13.92□□□□□ -0.18
RNU6-1140P-201ENST00000410517 ADRA2BP18089 450 aa13.87□□□□□ -0.19
RNU6-1140P-201ENST00000410517 PLPPR3Q6T4P5 718 aa13.82□□□□□ -0.2
RNU6-1140P-201ENST00000410517 MAPK8IP2Q13387 824 aaPredicted RBP12.91□□□□□ -0.34
RNU6-1140P-201ENST00000410517 DMRT2Q9Y5R5 561 aa12.88□□□□□ -0.35
RNU6-1140P-201ENST00000410517 CACNB1Q02641 598 aaPredicted RBP12.86□□□□□ -0.35
RNU6-1140P-201ENST00000410517 SCAF1Q9H7N4 1312 aaKnown RBP12.68□□□□□ -0.38
RNU6-1140P-201ENST00000410517 DCAF8L1A6NGE4 600 aa12.49□□□□□ -0.41
RNU6-1140P-201ENST00000410517 RNF39Q9H2S5 420 aa12.35□□□□□ -0.43
RNU6-1140P-201ENST00000410517 HOXD11P31277 338 aaPredicted RBP12.18□□□□□ -0.46
RNU6-1140P-201ENST00000410517 C1QBPQ07021 282 aaKnown RBP12.14□□□□□ -0.47
RNU6-1140P-201ENST00000410517 PPP4R3CPQ6ZMV5 832 aa12.06□□□□□ -0.48
RNU6-1140P-201ENST00000410517 RNF216Q9NWF9 866 aaPredicted RBP11.96□□□□□ -0.49
RNU6-1140P-201ENST00000410517 CNKSR2Q8WXI2 1034 aa11.94□□□□□ -0.5
RNU6-1140P-201ENST00000410517 DNAJC5BQ9UF47 199 aa11.82□□□□□ -0.52
RNU6-1140P-201ENST00000410517 POTEHQ6S545 545 aa11.75□□□□□ -0.53
RNU6-1140P-201ENST00000410517 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.69□□□□□ -0.54
RNU6-1140P-201ENST00000410517 NCBP3Q53F19 620 aaKnown RBP11.45□□□□□ -0.58
RNU6-1140P-201ENST00000410517 CAPN15O75808 1086 aa11.39□□□□□ -0.59
RNU6-1140P-201ENST00000410517 DSG3P32926 999 aa11.39□□□□□ -0.59
RNU6-1140P-201ENST00000410517 SPINK5Q9NQ38 1064 aaPredicted RBP11.35□□□□□ -0.59
RNU6-1140P-201ENST00000410517 U3KPZ7 1027 aaPredicted RBP11.32□□□□□ -0.6
RNU6-1140P-201ENST00000410517 NPM3O75607 178 aaKnown RBP11.26□□□□□ -0.61
RNU6-1140P-201ENST00000410517 ABCB7O75027 752 aa11.08□□□□□ -0.64
RNU6-1140P-201ENST00000410517 TRHP20396 242 aaPredicted RBP11.08□□□□□ -0.64
RNU6-1140P-201ENST00000410517 ZNF219Q9P2Y4 722 aaPredicted RBP10.99□□□□□ -0.65
RNU6-1140P-201ENST00000410517 APLP2Q06481 763 aa10.97□□□□□ -0.65
RNU6-1140P-201ENST00000410517 RBM42Q9BTD8 480 aaKnown RBP10.89□□□□□ -0.67
RNU6-1140P-201ENST00000410517 SLC4A2P04920 1241 aa10.88□□□□□ -0.67
RNU6-1140P-201ENST00000410517 CHRDL2Q6WN34 429 aa10.88□□□□□ -0.67
RNU6-1140P-201ENST00000410517 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.82□□□□□ -0.68
RNU6-1140P-201ENST00000410517 HNRNPUL2Q1KMD3 747 aaKnown RBP10.82□□□□□ -0.68
RNU6-1140P-201ENST00000410517 SP7Q8TDD2 431 aaPredicted RBP10.75□□□□□ -0.69
RNU6-1140P-201ENST00000410517 SAMD1Q6SPF0 538 aaPredicted RBP10.74□□□□□ -0.69
RNU6-1140P-201ENST00000410517 POLA2Q14181 598 aa10.64□□□□□ -0.71
RNU6-1140P-201ENST00000410517 KCNA4P22459 653 aa10.58□□□□□ -0.72
RNU6-1140P-201ENST00000410517 AKT1S1Q96B36 256 aa10.52□□□□□ -0.73
RNU6-1140P-201ENST00000410517 HAX1O00165 279 aa10.5□□□□□ -0.73
RNU6-1140P-201ENST00000410517 PIP4P2Q8N4L2 257 aa10.5□□□□□ -0.73
RNU6-1140P-201ENST00000410517 REM2Q8IYK8 340 aaPredicted RBP10.44□□□□□ -0.74
RNU6-1140P-201ENST00000410517 MYCNP04198 464 aaPredicted RBP10.42□□□□□ -0.74
RNU6-1140P-201ENST00000410517 ZBTB12Q9Y330 459 aaPredicted RBP10.35□□□□□ -0.75
RNU6-1140P-201ENST00000410517 PITPNM1O00562 1244 aa10.34□□□□□ -0.75
RNU6-1140P-201ENST00000410517 FXR2P51116 673 aaKnown RBP eCLIP10.33□□□□□ -0.76
RNU6-1140P-201ENST00000410517 OSCARQ8IYS5 282 aa10.31□□□□□ -0.76
RNU6-1140P-201ENST00000410517 EVX2Q03828 476 aa10.29□□□□□ -0.76
RNU6-1140P-201ENST00000410517 ATF5Q9Y2D1 282 aaPredicted RBP10.24□□□□□ -0.77
RNU6-1140P-201ENST00000410517 LHX8Q68G74 356 aa10.11□□□□□ -0.79
RNU6-1140P-201ENST00000410517 PRKAR2AP13861 404 aaKnown RBP10.08□□□□□ -0.8
RNU6-1140P-201ENST00000410517 GABBR2O75899 941 aa10.04□□□□□ -0.8
RNU6-1140P-201ENST00000410517 C19orf67A6NJJ6 358 aa10.02□□□□□ -0.81
RNU6-1140P-201ENST00000410517 FOXD4L1Q9NU39 408 aa10.02□□□□□ -0.81
RNU6-1140P-201ENST00000410517 CLEC11AQ9Y240 323 aa10.02□□□□□ -0.81
RNU6-1140P-201ENST00000410517 SPDYE2BA6NHP3 402 aa9.98□□□□□ -0.81
RNU6-1140P-201ENST00000410517 SPDYE6P0CI01 402 aa9.98□□□□□ -0.81
RNU6-1140P-201ENST00000410517 SPDYE2Q495Y8 402 aa9.98□□□□□ -0.81
RNU6-1140P-201ENST00000410517 PLSCR2Q9NRY7 297 aa9.97□□□□□ -0.81
RNU6-1140P-201ENST00000410517 SPDYE1Q8NFV5 336 aaPredicted RBP9.96□□□□□ -0.82
RNU6-1140P-201ENST00000410517 FBLN2P98095 1184 aa9.9□□□□□ -0.82
RNU6-1140P-201ENST00000410517 SLC4A1APQ9BWU0 796 aaKnown RBP9.89□□□□□ -0.83
RNU6-1140P-201ENST00000410517 CHADLQ6NUI6 762 aa9.87□□□□□ -0.83
RNU6-1140P-201ENST00000410517 ZNF692Q9BU19 519 aaPredicted RBP9.82□□□□□ -0.84
RNU6-1140P-201ENST00000410517 POTEIP0CG38 1075 aa9.8□□□□□ -0.84
RNU6-1140P-201ENST00000410517 SSUH2Q9Y2M2 353 aa9.76□□□□□ -0.85
RNU6-1140P-201ENST00000410517 PRR29P0C7W0 189 aa9.75□□□□□ -0.85
RNU6-1140P-201ENST00000410517 ATXN8OSP0DMR3 200 aa9.75□□□□□ -0.85
RNU6-1140P-201ENST00000410517 CD44P16070 742 aaKnown RBP9.73□□□□□ -0.85
RNU6-1140P-201ENST00000410517 MKRN4PQ13434 485 aaPredicted RBP9.72□□□□□ -0.85
RNU6-1140P-201ENST00000410517 ZBTB22O15209 634 aa9.7□□□□□ -0.86
RNU6-1140P-201ENST00000410517 DCBLD2Q96PD2 775 aa9.68□□□□□ -0.86
RNU6-1140P-201ENST00000410517 PABPN1Q86U42 306 aaKnown RBP eCLIP9.65□□□□□ -0.86
RNU6-1140P-201ENST00000410517 CLCN6P51797 869 aa9.64□□□□□ -0.87
RNU6-1140P-201ENST00000410517 FARP1Q9Y4F1 1045 aaPredicted RBP9.64□□□□□ -0.87
RNU6-1140P-201ENST00000410517 OTUD5Q96G74 571 aa9.55□□□□□ -0.88
RNU6-1140P-201ENST00000410517 POTEMA6NI47 508 aa9.54□□□□□ -0.88
RNU6-1140P-201ENST00000410517 ZRANB1Q9UGI0 708 aa9.52□□□□□ -0.89
RNU6-1140P-201ENST00000410517 ZNF579Q8NAF0 562 aaKnown RBP9.51□□□□□ -0.89
RNU6-1140P-201ENST00000410517 POTEGQ6S5H5 508 aa9.5□□□□□ -0.89
RNU6-1140P-201ENST00000410517 POTEB2H3BUK9 544 aa9.47□□□□□ -0.89
RNU6-1140P-201ENST00000410517 GALR2O43603 387 aaPredicted RBP9.46□□□□□ -0.9
RNU6-1140P-201ENST00000410517 PCDH10Q9P2E7 1040 aa9.38□□□□□ -0.91
RNU6-1140P-201ENST00000410517 CREBZFQ9NS37 354 aa9.35□□□□□ -0.91
RNU6-1140P-201ENST00000410517 PHF12Q96QT6 1004 aa9.34□□□□□ -0.91
RNU6-1140P-201ENST00000410517 PAK3O75914 559 aaPredicted RBP9.33□□□□□ -0.92
RNU6-1140P-201ENST00000410517 PELP1Q8IZL8 1130 aaKnown RBP9.33□□□□□ -0.92
RNU6-1140P-201ENST00000410517 FAM163AQ96GL9 167 aaPredicted RBP9.27□□□□□ -0.93
RNU6-1140P-201ENST00000410517 METRNQ9UJH8 293 aa9.27□□□□□ -0.93
RNU6-1140P-201ENST00000410517 POTEJP0CG39 1038 aa9.25□□□□□ -0.93
RNU6-1140P-201ENST00000410517 STAG3Q9UJ98 1225 aa9.25□□□□□ -0.93
RNU6-1140P-201ENST00000410517 MAMSTRQ6ZN01 415 aa9.24□□□□□ -0.93
RNU6-1140P-201ENST00000410517 C7P10643 843 aa9.22□□□□□ -0.93
RNU6-1140P-201ENST00000410517 SLC39A7Q92504 469 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 112.6 ms