Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL9A1P20849 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC4.79□□□□□ -1.64
COL9A1P20849 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL9A1P20849 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL9A1P20849 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
COL9A1P20849 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
COL9A1P20849 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL9A1P20849 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL9A1P20849 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.78□□□□□ -1.64
COL9A1P20849 AL161912.2-201ENST00000565707 3007 ntBASIC4.78□□□□□ -1.64
COL9A1P20849 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC4.78□□□□□ -1.64
COL9A1P20849 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL9A1P20849 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
COL9A1P20849 RNA5SP124-201ENST00000362739 110 ntBASIC4.78□□□□□ -1.64
COL9A1P20849 RNU6-813P-201ENST00000384691 107 ntBASIC4.78□□□□□ -1.64
COL9A1P20849 AL139095.1-201ENST00000404326 391 ntBASIC4.78□□□□□ -1.64
COL9A1P20849 AL356095.1-201ENST00000417217 199 ntBASIC4.78□□□□□ -1.64
COL9A1P20849 ATP5EP1-201ENST00000510257 156 ntBASIC4.78□□□□□ -1.64
COL9A1P20849 RNU6-928P-201ENST00000516876 104 ntBASIC4.78□□□□□ -1.64
COL9A1P20849 IGKV3-31-201ENST00000523109 329 ntBASIC4.78□□□□□ -1.64
COL9A1P20849 MIR5009-201ENST00000578736 100 ntBASIC4.78□□□□□ -1.64
COL9A1P20849 AC091152.3-201ENST00000604227 325 ntBASIC4.78□□□□□ -1.64
COL9A1P20849 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.78□□□□□ -1.64
COL9A1P20849 AC009093.8-201ENST00000641769 292 ntBASIC4.78□□□□□ -1.64
COL9A1P20849 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL9A1P20849 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.78□□□□□ -1.64
COL9A1P20849 MED23-203ENST00000368058 4576 ntTSL 5 BASIC4.78□□□□□ -1.64
COL9A1P20849 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL9A1P20849 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
COL9A1P20849 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.78□□□□□ -1.64
COL9A1P20849 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL9A1P20849 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
COL9A1P20849 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.78□□□□□ -1.65
COL9A1P20849 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL9A1P20849 AC007496.3-201ENST00000624987 3443 ntBASIC4.77□□□□□ -1.65
COL9A1P20849 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL9A1P20849 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
COL9A1P20849 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
COL9A1P20849 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.77□□□□□ -1.65
COL9A1P20849 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL9A1P20849 MIR494-201ENST00000349529 81 ntBASIC4.77□□□□□ -1.65
COL9A1P20849 RNU6-655P-201ENST00000362858 107 ntBASIC4.77□□□□□ -1.65
COL9A1P20849 Y_RNA.66-201ENST00000362862 102 ntBASIC4.77□□□□□ -1.65
COL9A1P20849 Y_RNA.198-201ENST00000364013 98 ntBASIC4.77□□□□□ -1.65
COL9A1P20849 RNA5SP72-201ENST00000364442 117 ntBASIC4.77□□□□□ -1.65
COL9A1P20849 AL133475.1-201ENST00000404414 305 ntBASIC4.77□□□□□ -1.65
COL9A1P20849 AC063976.3-201ENST00000426849 329 ntBASIC4.77□□□□□ -1.65
COL9A1P20849 HMGN2P21-201ENST00000447764 270 ntBASIC4.77□□□□□ -1.65
COL9A1P20849 RN7SL517P-201ENST00000462240 305 ntBASIC4.77□□□□□ -1.65
COL9A1P20849 RN7SL98P-201ENST00000462271 300 ntBASIC4.77□□□□□ -1.65
COL9A1P20849 RNU6-504P-201ENST00000516568 104 ntBASIC4.77□□□□□ -1.65
COL9A1P20849 RNU7-149P-201ENST00000516739 59 ntBASIC4.77□□□□□ -1.65
COL9A1P20849 AL929325.1-201ENST00000603096 117 ntBASIC4.77□□□□□ -1.65
COL9A1P20849 AC107294.3-201ENST00000609211 526 ntBASIC4.77□□□□□ -1.65
COL9A1P20849 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL9A1P20849 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL9A1P20849 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.77□□□□□ -1.65
COL9A1P20849 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
COL9A1P20849 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
COL9A1P20849 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL9A1P20849 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL9A1P20849 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC4.76□□□□□ -1.65
COL9A1P20849 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL9A1P20849 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL9A1P20849 MIR181A2-201ENST00000384863 110 ntBASIC4.76□□□□□ -1.65
COL9A1P20849 MIR562-201ENST00000384894 95 ntBASIC4.76□□□□□ -1.65
COL9A1P20849 MIR181B1-201ENST00000385240 110 ntBASIC4.76□□□□□ -1.65
COL9A1P20849 MIR300-201ENST00000401138 83 ntBASIC4.76□□□□□ -1.65
COL9A1P20849 RNA5SP511-201ENST00000410487 115 ntBASIC4.76□□□□□ -1.65
COL9A1P20849 COX5BP7-201ENST00000414780 274 ntBASIC4.76□□□□□ -1.65
COL9A1P20849 NDUFB1P1-201ENST00000435191 180 ntBASIC4.76□□□□□ -1.65
COL9A1P20849 AC018634.1-201ENST00000437554 401 ntBASIC4.76□□□□□ -1.65
COL9A1P20849 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC4.76□□□□□ -1.65
COL9A1P20849 ABCF2P2-201ENST00000450549 296 ntBASIC4.76□□□□□ -1.65
COL9A1P20849 RNU7-57P-201ENST00000459540 60 ntBASIC4.76□□□□□ -1.65
COL9A1P20849 AC140134.1-201ENST00000511830 3544 ntBASIC4.76□□□□□ -1.65
COL9A1P20849 AC026421.1-201ENST00000519101 163 ntBASIC4.76□□□□□ -1.65
COL9A1P20849 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC4.76□□□□□ -1.65
COL9A1P20849 RPL23AP97-201ENST00000568955 471 ntBASIC4.76□□□□□ -1.65
COL9A1P20849 AL590808.1-201ENST00000618696 141 ntBASIC4.76□□□□□ -1.65
COL9A1P20849 AC002064.3-201ENST00000623448 346 ntBASIC4.76□□□□□ -1.65
COL9A1P20849 AC073308.1-201ENST00000623696 305 ntBASIC4.76□□□□□ -1.65
COL9A1P20849 AC006435.5-201ENST00000624486 112 ntBASIC4.76□□□□□ -1.65
COL9A1P20849 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL9A1P20849 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
COL9A1P20849 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC4.76□□□□□ -1.65
COL9A1P20849 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL9A1P20849 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC4.76□□□□□ -1.65
COL9A1P20849 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL9A1P20849 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC4.76□□□□□ -1.65
COL9A1P20849 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL9A1P20849 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL9A1P20849 AP001029.2-203ENST00000589795 4910 ntBASIC4.75□□□□□ -1.65
COL9A1P20849 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.75□□□□□ -1.65
COL9A1P20849 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC4.75□□□□□ -1.65
COL9A1P20849 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC4.75□□□□□ -1.65
COL9A1P20849 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
COL9A1P20849 AC058791.1-201ENST00000608412 3198 ntBASIC4.75□□□□□ -1.65
COL9A1P20849 SNORA71.2-201ENST00000364941 134 ntBASIC4.75□□□□□ -1.65
COL9A1P20849 RNU6-1134P-201ENST00000365156 101 ntBASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms