Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 RNU1-40P-201ENST00000516816 164 ntBASIC1.96□□□□□ -2.1
LHX3Q9UBR4 RNU1-97P-201ENST00000516872 164 ntBASIC1.96□□□□□ -2.1
LHX3Q9UBR4 AC022616.8-201ENST00000533569 253 ntBASIC1.96□□□□□ -2.1
LHX3Q9UBR4 AC121758.2-201ENST00000553271 193 ntBASIC1.96□□□□□ -2.1
LHX3Q9UBR4 AC103996.1-201ENST00000555468 102 ntBASIC1.96□□□□□ -2.1
LHX3Q9UBR4 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC1.96□□□□□ -2.1
LHX3Q9UBR4 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.96□□□□□ -2.1
LHX3Q9UBR4 SNRPGP17-201ENST00000603780 214 ntBASIC1.96□□□□□ -2.1
LHX3Q9UBR4 AL359880.1-201ENST00000621879 266 ntBASIC1.96□□□□□ -2.1
LHX3Q9UBR4 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
LHX3Q9UBR4 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
LHX3Q9UBR4 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
LHX3Q9UBR4 RNU6-1141P-201ENST00000364520 107 ntBASIC1.95□□□□□ -2.1
LHX3Q9UBR4 RNU4-66P-201ENST00000365199 138 ntBASIC1.95□□□□□ -2.1
LHX3Q9UBR4 SNORA6-201ENST00000384033 151 ntBASIC1.95□□□□□ -2.1
LHX3Q9UBR4 RNU6-43P-201ENST00000384302 107 ntBASIC1.95□□□□□ -2.1
LHX3Q9UBR4 MIR1289-2-201ENST00000408360 111 ntBASIC1.95□□□□□ -2.1
LHX3Q9UBR4 RNU2-48P-201ENST00000410694 191 ntBASIC1.95□□□□□ -2.1
LHX3Q9UBR4 AL137159.1-201ENST00000452808 512 ntBASIC1.95□□□□□ -2.1
LHX3Q9UBR4 TPTE2P5-203ENST00000458118 728 ntBASIC1.95□□□□□ -2.1
LHX3Q9UBR4 Y_RNA.704-201ENST00000516851 102 ntBASIC1.95□□□□□ -2.1
LHX3Q9UBR4 AC018630.3-201ENST00000542637 96 ntBASIC1.95□□□□□ -2.1
LHX3Q9UBR4 AL512360.1-201ENST00000555346 234 ntBASIC1.95□□□□□ -2.1
LHX3Q9UBR4 MIR4529-201ENST00000578110 78 ntBASIC1.95□□□□□ -2.1
LHX3Q9UBR4 MIR5694-201ENST00000581190 76 ntBASIC1.95□□□□□ -2.1
LHX3Q9UBR4 AC078899.2-201ENST00000595282 212 ntBASIC1.95□□□□□ -2.1
LHX3Q9UBR4 VN1R80P-201ENST00000597126 338 ntBASIC1.95□□□□□ -2.1
LHX3Q9UBR4 AC004908.3-201ENST00000610248 625 ntBASIC1.95□□□□□ -2.1
LHX3Q9UBR4 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
LHX3Q9UBR4 AC063943.3-201ENST00000615562 356 ntBASIC1.95□□□□□ -2.1
LHX3Q9UBR4 AP006437.1-201ENST00000641440 3685 ntBASIC1.95□□□□□ -2.1
LHX3Q9UBR4 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
LHX3Q9UBR4 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.94□□□□□ -2.1
LHX3Q9UBR4 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
LHX3Q9UBR4 AC131280.1-202ENST00000624067 4211 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 RNU6-82P-201ENST00000363970 107 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 Y_RNA.372-201ENST00000365599 102 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 RNU6-611P-201ENST00000384276 104 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 SNORA40.19-201ENST00000390846 128 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 HMGN2P39-201ENST00000398005 273 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 AL355497.1-201ENST00000406262 551 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 RNU2-20P-201ENST00000410425 191 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 Y_RNA.597-201ENST00000410463 100 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.94□□□□□ -2.1
LHX3Q9UBR4 AC244670.1-201ENST00000436879 112 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 MTND1P1-201ENST00000445453 368 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.94□□□□□ -2.1
LHX3Q9UBR4 MTCO2P7-201ENST00000446518 666 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 PSPHP1-201ENST00000450062 261 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 AC055731.1-201ENST00000474387 401 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 HMGB1P35-201ENST00000503360 598 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 RNU6-835P-201ENST00000516974 104 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 RNU2-19P-201ENST00000517288 84 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 IGLV3-17-201ENST00000519099 244 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 OR11H5P-201ENST00000554039 926 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 AL118558.2-201ENST00000556294 238 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 AC110588.1-201ENST00000559699 137 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 MIR3136-201ENST00000583498 78 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 AC007229.1-201ENST00000590455 412 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 AL356157.2-201ENST00000605122 111 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 AC018889.1-201ENST00000605372 397 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 AC092954.2-201ENST00000609103 430 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 AL132822.1-201ENST00000617063 513 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.94□□□□□ -2.1
LHX3Q9UBR4 AP000553.5-201ENST00000641933 54 ntBASIC1.94□□□□□ -2.1
LHX3Q9UBR4 SNORA16B-201ENST00000364674 135 ntBASIC1.93□□□□□ -2.1
LHX3Q9UBR4 RNU4-20P-201ENST00000365601 151 ntBASIC1.93□□□□□ -2.1
LHX3Q9UBR4 Y_RNA.378-201ENST00000365652 113 ntBASIC1.93□□□□□ -2.1
LHX3Q9UBR4 RNU6-38P-201ENST00000384085 107 ntBASIC1.93□□□□□ -2.1
LHX3Q9UBR4 SNORD73A-201ENST00000386062 65 ntBASIC1.93□□□□□ -2.1
LHX3Q9UBR4 U8.13-201ENST00000390842 128 ntBASIC1.93□□□□□ -2.1
LHX3Q9UBR4 RNU6-1106P-201ENST00000390845 107 ntBASIC1.93□□□□□ -2.1
LHX3Q9UBR4 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.93□□□□□ -2.1
LHX3Q9UBR4 CBX3P6-201ENST00000430257 527 ntBASIC1.93□□□□□ -2.1
LHX3Q9UBR4 AC003989.2-201ENST00000440224 169 ntBASIC1.93□□□□□ -2.1
LHX3Q9UBR4 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.93□□□□□ -2.1
LHX3Q9UBR4 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC1.93□□□□□ -2.1
LHX3Q9UBR4 IPO7P1-201ENST00000442031 636 ntBASIC1.93□□□□□ -2.1
LHX3Q9UBR4 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.93□□□□□ -2.1
LHX3Q9UBR4 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC1.93□□□□□ -2.1
LHX3Q9UBR4 AL031659.1-201ENST00000447075 539 ntBASIC1.93□□□□□ -2.1
LHX3Q9UBR4 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.93□□□□□ -2.1
LHX3Q9UBR4 RNU6-333P-201ENST00000459117 107 ntBASIC1.93□□□□□ -2.1
LHX3Q9UBR4 RNU7-138P-201ENST00000459479 64 ntBASIC1.93□□□□□ -2.1
LHX3Q9UBR4 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
LHX3Q9UBR4 SNORA14.1-201ENST00000516113 141 ntBASIC1.93□□□□□ -2.1
LHX3Q9UBR4 Y_RNA.693-201ENST00000516641 110 ntBASIC1.93□□□□□ -2.1
LHX3Q9UBR4 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.93□□□□□ -2.1
LHX3Q9UBR4 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.93□□□□□ -2.1
LHX3Q9UBR4 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.93□□□□□ -2.1
LHX3Q9UBR4 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.93□□□□□ -2.1
LHX3Q9UBR4 AL158827.2-201ENST00000602494 330 ntBASIC1.93□□□□□ -2.1
LHX3Q9UBR4 AC092747.3-201ENST00000603769 301 ntBASIC1.93□□□□□ -2.1
LHX3Q9UBR4 AL691447.3-201ENST00000635020 330 ntBASIC1.93□□□□□ -2.1
LHX3Q9UBR4 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
LHX3Q9UBR4 AP000560.1-201ENST00000624150 1937 ntBASIC1.93□□□□□ -2.1
LHX3Q9UBR4 AL596028.1-201ENST00000326971 197 ntBASIC1.92□□□□□ -2.1
LHX3Q9UBR4 RNA5SP138-201ENST00000365098 114 ntBASIC1.92□□□□□ -2.1
LHX3Q9UBR4 POLHP1-201ENST00000411806 470 ntBASIC1.92□□□□□ -2.1
LHX3Q9UBR4 EIF1AXP1-201ENST00000419267 435 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 121.9 ms