Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 MIR1244-4-202ENST00000636813 85 ntBASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.77□□□□□ -1.97
CCDC28AQ8IWP9 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 AC000403.1-201ENST00000613696 3585 ntBASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 Y_RNA.314-201ENST00000365114 102 ntBASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 RNU1-115P-201ENST00000365329 160 ntBASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 U8.10-201ENST00000384260 133 ntBASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 MIR181B1-201ENST00000385240 110 ntBASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 RNU6-220P-201ENST00000390919 107 ntBASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 FO393413.1-201ENST00000402892 195 ntBASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 AC115115.1-201ENST00000449927 248 ntBASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 EEF1B2P7-201ENST00000451177 676 ntBASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 RNU6-1198P-201ENST00000516904 67 ntBASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 AC144568.1-201ENST00000520139 137 ntBASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 AC023442.1-201ENST00000531247 422 ntBASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 AC007224.1-201ENST00000564410 144 ntBASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 MIR3171-201ENST00000584270 74 ntBASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 PCGEM1.1-201ENST00000613431 131 ntBASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 AC008121.3-201ENST00000618726 433 ntBASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 MIR5739-201ENST00000619803 80 ntBASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 AC091925.1-201ENST00000623204 462 ntBASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 AP000553.6-201ENST00000641242 118 ntBASIC2.76□□□□□ -1.97
CCDC28AQ8IWP9 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC28AQ8IWP9 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.75□□□□□ -1.97
CCDC28AQ8IWP9 SNORA63-201ENST00000363450 132 ntBASIC2.75□□□□□ -1.97
CCDC28AQ8IWP9 RNU1-13P-201ENST00000384499 162 ntBASIC2.75□□□□□ -1.97
CCDC28AQ8IWP9 SNORA46.1-201ENST00000391069 153 ntBASIC2.75□□□□□ -1.97
CCDC28AQ8IWP9 RNU6-1093P-201ENST00000391194 107 ntBASIC2.75□□□□□ -1.97
CCDC28AQ8IWP9 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC28AQ8IWP9 AC092427.1-202ENST00000430569 476 ntBASIC2.75□□□□□ -1.97
CCDC28AQ8IWP9 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.75□□□□□ -1.97
CCDC28AQ8IWP9 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC28AQ8IWP9 CYP2C59P-201ENST00000457790 269 ntBASIC2.75□□□□□ -1.97
CCDC28AQ8IWP9 snoU13.22-201ENST00000459428 104 ntBASIC2.75□□□□□ -1.97
CCDC28AQ8IWP9 RN7SL594P-201ENST00000470590 287 ntBASIC2.75□□□□□ -1.97
CCDC28AQ8IWP9 Y_RNA.711-201ENST00000516993 102 ntBASIC2.75□□□□□ -1.97
CCDC28AQ8IWP9 RNU6-586P-201ENST00000517265 104 ntBASIC2.75□□□□□ -1.97
CCDC28AQ8IWP9 ELOCP31-201ENST00000540463 467 ntBASIC2.75□□□□□ -1.97
CCDC28AQ8IWP9 AC004486.1-201ENST00000546846 233 ntBASIC2.75□□□□□ -1.97
CCDC28AQ8IWP9 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC28AQ8IWP9 AC090616.3-201ENST00000582184 217 ntBASIC2.75□□□□□ -1.97
CCDC28AQ8IWP9 AC083809.1-201ENST00000615051 472 ntBASIC2.75□□□□□ -1.97
CCDC28AQ8IWP9 MIR6875-201ENST00000617506 72 ntBASIC2.75□□□□□ -1.97
CCDC28AQ8IWP9 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC2.75□□□□□ -1.97
CCDC28AQ8IWP9 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 RNU6-137P-201ENST00000363680 108 ntBASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 U3.9-201ENST00000363823 204 ntBASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 SNORD115-8-201ENST00000363856 82 ntBASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 RNU6-1180P-201ENST00000364935 107 ntBASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 SNORD115-38-201ENST00000365037 82 ntBASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 Y_RNA.319-201ENST00000365138 92 ntBASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 Y_RNA.364-201ENST00000365532 101 ntBASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 IARS-201ENST00000375627 697 ntTSL 3 BASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 RNU6-378P-201ENST00000384324 107 ntBASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 Y_RNA.496-201ENST00000384444 101 ntBASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 RNU6-308P-201ENST00000390957 107 ntBASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 PMCHL1-202ENST00000423102 261 ntBASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 RSL24D1P6-201ENST00000426934 401 ntBASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 AL445687.1-201ENST00000439946 251 ntBASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 UBBP3-201ENST00000445497 241 ntBASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 CKS1BP2-201ENST00000497342 240 ntBASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 AC091826.1-201ENST00000514065 313 ntBASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 SCARNA14-201ENST00000516903 136 ntBASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 RN7SKP295-201ENST00000517264 153 ntBASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 EIF4A1P12-201ENST00000551910 141 ntBASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 AC136624.4-201ENST00000573044 370 ntBASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
CCDC28AQ8IWP9 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC2.73□□□□□ -1.97
CCDC28AQ8IWP9 AL161431.1-201ENST00000618966 4205 ntBASIC2.73□□□□□ -1.97
CCDC28AQ8IWP9 RNU6-874P-201ENST00000362390 105 ntBASIC2.73□□□□□ -1.97
CCDC28AQ8IWP9 Y_RNA.28-201ENST00000362554 111 ntBASIC2.73□□□□□ -1.97
CCDC28AQ8IWP9 Y_RNA.31-201ENST00000362574 102 ntBASIC2.73□□□□□ -1.97
CCDC28AQ8IWP9 Y_RNA.106-201ENST00000363189 100 ntBASIC2.73□□□□□ -1.97
CCDC28AQ8IWP9 RNA5SP240-201ENST00000365355 128 ntBASIC2.73□□□□□ -1.97
CCDC28AQ8IWP9 RNA5SP283-201ENST00000365604 119 ntBASIC2.73□□□□□ -1.97
CCDC28AQ8IWP9 RNU6-213P-201ENST00000384051 104 ntBASIC2.73□□□□□ -1.97
CCDC28AQ8IWP9 RNU6-1032P-201ENST00000384100 107 ntBASIC2.73□□□□□ -1.97
CCDC28AQ8IWP9 RNU6-541P-201ENST00000384709 110 ntBASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 117.1 ms