Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 Y_RNA.691-201ENST00000516611 103 ntBASIC2.62□□□□□ -1.99
COL28A1Q2UY09 RNU7-30P-201ENST00000516835 62 ntBASIC2.62□□□□□ -1.99
COL28A1Q2UY09 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.62□□□□□ -1.99
COL28A1Q2UY09 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC2.62□□□□□ -1.99
COL28A1Q2UY09 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.62□□□□□ -1.99
COL28A1Q2UY09 AP005639.2-201ENST00000527592 928 ntBASIC2.62□□□□□ -1.99
COL28A1Q2UY09 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC2.62□□□□□ -1.99
COL28A1Q2UY09 HPRT1P3-201ENST00000539521 576 ntBASIC2.62□□□□□ -1.99
COL28A1Q2UY09 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.62□□□□□ -1.99
COL28A1Q2UY09 AC005730.3-201ENST00000583067 366 ntBASIC2.62□□□□□ -1.99
COL28A1Q2UY09 AC073410.2-201ENST00000603240 332 ntBASIC2.62□□□□□ -1.99
COL28A1Q2UY09 AL133215.3-201ENST00000609801 448 ntBASIC2.62□□□□□ -1.99
COL28A1Q2UY09 AC092794.2-201ENST00000620933 563 ntBASIC2.62□□□□□ -1.99
COL28A1Q2UY09 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.62□□□□□ -1.99
COL28A1Q2UY09 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
COL28A1Q2UY09 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
COL28A1Q2UY09 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
COL28A1Q2UY09 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
COL28A1Q2UY09 AL161431.1-201ENST00000618966 4205 ntBASIC2.61□□□□□ -1.99
COL28A1Q2UY09 RPL9P7-201ENST00000330965 580 ntBASIC2.61□□□□□ -1.99
COL28A1Q2UY09 RNA5SP289-201ENST00000362332 137 ntBASIC2.61□□□□□ -1.99
COL28A1Q2UY09 SNORD62.1-201ENST00000362541 86 ntBASIC2.61□□□□□ -1.99
COL28A1Q2UY09 RNU6-1285P-201ENST00000363480 105 ntBASIC2.61□□□□□ -1.99
COL28A1Q2UY09 SNORD114-30-201ENST00000364448 72 ntBASIC2.61□□□□□ -1.99
COL28A1Q2UY09 SNORD81.2-201ENST00000365153 76 ntBASIC2.61□□□□□ -1.99
COL28A1Q2UY09 MIR548K-201ENST00000408406 116 ntBASIC2.61□□□□□ -1.99
COL28A1Q2UY09 MIR1287-201ENST00000408492 90 ntBASIC2.61□□□□□ -1.99
COL28A1Q2UY09 AC138623.1-201ENST00000418060 216 ntBASIC2.61□□□□□ -1.99
COL28A1Q2UY09 RPS29P6-201ENST00000438196 145 ntBASIC2.61□□□□□ -1.99
COL28A1Q2UY09 MTND4P18-201ENST00000447010 465 ntBASIC2.61□□□□□ -1.99
COL28A1Q2UY09 RPL39P29-201ENST00000447779 157 ntBASIC2.61□□□□□ -1.99
COL28A1Q2UY09 AL353705.4-201ENST00000449661 238 ntBASIC2.61□□□□□ -1.99
COL28A1Q2UY09 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.61□□□□□ -1.99
COL28A1Q2UY09 RPS29P27-201ENST00000463711 170 ntBASIC2.61□□□□□ -1.99
COL28A1Q2UY09 RPL9P9-202ENST00000466501 579 ntBASIC2.61□□□□□ -1.99
COL28A1Q2UY09 AC096725.1-201ENST00000514266 313 ntBASIC2.61□□□□□ -1.99
COL28A1Q2UY09 RNU6-612P-201ENST00000516909 102 ntBASIC2.61□□□□□ -1.99
COL28A1Q2UY09 AC115990.1-201ENST00000526957 301 ntBASIC2.61□□□□□ -1.99
COL28A1Q2UY09 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.61□□□□□ -1.99
COL28A1Q2UY09 AC091135.1-201ENST00000585943 307 ntBASIC2.61□□□□□ -1.99
COL28A1Q2UY09 uc_338.15-201ENST00000615470 191 ntBASIC2.61□□□□□ -1.99
COL28A1Q2UY09 AL133216.2-202ENST00000634512 349 ntBASIC2.61□□□□□ -1.99
COL28A1Q2UY09 AP000560.1-201ENST00000624150 1937 ntBASIC2.61□□□□□ -1.99
COL28A1Q2UY09 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.61□□□□□ -1.99
COL28A1Q2UY09 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.6□□□□□ -1.99
COL28A1Q2UY09 RNU6-227P-201ENST00000362865 103 ntBASIC2.6□□□□□ -1.99
COL28A1Q2UY09 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
COL28A1Q2UY09 MIR544A-201ENST00000384855 91 ntBASIC2.6□□□□□ -1.99
COL28A1Q2UY09 MIR186-201ENST00000384988 86 ntBASIC2.6□□□□□ -1.99
COL28A1Q2UY09 RNU6-1140P-201ENST00000410517 106 ntBASIC2.6□□□□□ -1.99
COL28A1Q2UY09 RN7SKP61-201ENST00000410642 295 ntBASIC2.6□□□□□ -1.99
COL28A1Q2UY09 RNU4-53P-201ENST00000410828 140 ntBASIC2.6□□□□□ -1.99
COL28A1Q2UY09 AL590632.1-201ENST00000424289 371 ntBASIC2.6□□□□□ -1.99
COL28A1Q2UY09 EIF4EP4-201ENST00000424916 578 ntBASIC2.6□□□□□ -1.99
COL28A1Q2UY09 RPL30P4-201ENST00000429309 333 ntBASIC2.6□□□□□ -1.99
COL28A1Q2UY09 DAP3P1-201ENST00000441522 278 ntBASIC2.6□□□□□ -1.99
COL28A1Q2UY09 MTND5P20-201ENST00000448677 143 ntBASIC2.6□□□□□ -1.99
COL28A1Q2UY09 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC2.6□□□□□ -1.99
COL28A1Q2UY09 RNU7-187P-201ENST00000458985 68 ntBASIC2.6□□□□□ -1.99
COL28A1Q2UY09 AC090525.1-201ENST00000479116 478 ntBASIC2.6□□□□□ -1.99
COL28A1Q2UY09 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.6□□□□□ -1.99
COL28A1Q2UY09 AC134698.4-201ENST00000523451 826 ntBASIC2.6□□□□□ -1.99
COL28A1Q2UY09 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.6□□□□□ -1.99
COL28A1Q2UY09 AC105245.1-201ENST00000581934 244 ntBASIC2.6□□□□□ -1.99
COL28A1Q2UY09 MIR3199-1-201ENST00000582434 88 ntBASIC2.6□□□□□ -1.99
COL28A1Q2UY09 AL356280.1-201ENST00000603614 379 ntBASIC2.6□□□□□ -1.99
COL28A1Q2UY09 AC069294.1-201ENST00000608397 350 ntBASIC2.6□□□□□ -1.99
COL28A1Q2UY09 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC2.6□□□□□ -1.99
COL28A1Q2UY09 CTSLP2-204ENST00000629029 392 ntBASIC2.6□□□□□ -1.99
COL28A1Q2UY09 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
COL28A1Q2UY09 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.6□□□□□ -1.99
COL28A1Q2UY09 MTND4P27-201ENST00000450813 1354 ntBASIC2.6□□□□□ -1.99
COL28A1Q2UY09 Z82195.2-201ENST00000612348 18351 ntBASIC2.59□□□□□ -1.99
COL28A1Q2UY09 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
COL28A1Q2UY09 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.59□□□□□ -1.99
COL28A1Q2UY09 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
COL28A1Q2UY09 Y_RNA.40-201ENST00000362645 93 ntBASIC2.59□□□□□ -1.99
COL28A1Q2UY09 RNU6-1317P-201ENST00000364582 104 ntBASIC2.59□□□□□ -1.99
COL28A1Q2UY09 Y_RNA.269-201ENST00000364685 89 ntBASIC2.59□□□□□ -1.99
COL28A1Q2UY09 Y_RNA.339-201ENST00000365325 102 ntBASIC2.59□□□□□ -1.99
COL28A1Q2UY09 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
COL28A1Q2UY09 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -1.99
COL28A1Q2UY09 RNU6-43P-201ENST00000384302 107 ntBASIC2.59□□□□□ -1.99
COL28A1Q2UY09 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.59□□□□□ -1.99
COL28A1Q2UY09 AC078809.1-201ENST00000427601 140 ntBASIC2.59□□□□□ -1.99
COL28A1Q2UY09 AC092427.1-202ENST00000430569 476 ntBASIC2.59□□□□□ -1.99
COL28A1Q2UY09 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.59□□□□□ -1.99
COL28A1Q2UY09 AL353572.1-201ENST00000442490 417 ntBASIC2.59□□□□□ -1.99
COL28A1Q2UY09 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC2.59□□□□□ -1.99
COL28A1Q2UY09 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.59□□□□□ -1.99
COL28A1Q2UY09 UBBP3-201ENST00000445497 241 ntBASIC2.59□□□□□ -1.99
COL28A1Q2UY09 AL031659.1-201ENST00000447075 539 ntBASIC2.59□□□□□ -1.99
COL28A1Q2UY09 MTND5P5-201ENST00000503764 376 ntBASIC2.59□□□□□ -1.99
COL28A1Q2UY09 Y_RNA.682-201ENST00000516457 100 ntBASIC2.59□□□□□ -1.99
COL28A1Q2UY09 AC109329.2-201ENST00000519658 482 ntBASIC2.59□□□□□ -1.99
COL28A1Q2UY09 AP005902.1-201ENST00000521358 186 ntBASIC2.59□□□□□ -1.99
COL28A1Q2UY09 AC005668.1-201ENST00000571142 476 ntBASIC2.59□□□□□ -1.99
COL28A1Q2UY09 MIR4790-201ENST00000577799 79 ntBASIC2.59□□□□□ -1.99
COL28A1Q2UY09 AC078795.3-201ENST00000602913 472 ntBASIC2.59□□□□□ -1.99
COL28A1Q2UY09 MIR8076-201ENST00000611401 83 ntBASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 130.1 ms