Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC2.73□□□□□ -1.97
SOX2P48431 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
SOX2P48431 AC008264.2-201ENST00000610193 3731 ntBASIC2.72□□□□□ -1.97
SOX2P48431 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
SOX2P48431 RNU6-874P-201ENST00000362390 105 ntBASIC2.72□□□□□ -1.97
SOX2P48431 RNU5B-2P-201ENST00000363036 113 ntBASIC2.72□□□□□ -1.97
SOX2P48431 RNA5SP50-201ENST00000363731 107 ntBASIC2.72□□□□□ -1.97
SOX2P48431 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.72□□□□□ -1.97
SOX2P48431 RNU6-1027P-201ENST00000383998 107 ntBASIC2.72□□□□□ -1.97
SOX2P48431 Y_RNA.526-201ENST00000384572 110 ntBASIC2.72□□□□□ -1.97
SOX2P48431 MIR32-201ENST00000384965 70 ntBASIC2.72□□□□□ -1.97
SOX2P48431 AL031121.1-201ENST00000406553 254 ntBASIC2.72□□□□□ -1.97
SOX2P48431 RN7SKP58-201ENST00000411010 305 ntBASIC2.72□□□□□ -1.97
SOX2P48431 MTCO3P19-201ENST00000415864 321 ntBASIC2.72□□□□□ -1.97
SOX2P48431 CYCSP48-201ENST00000417124 323 ntBASIC2.72□□□□□ -1.97
SOX2P48431 AC114482.1-201ENST00000418010 247 ntBASIC2.72□□□□□ -1.97
SOX2P48431 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.72□□□□□ -1.97
SOX2P48431 RNU6-911P-201ENST00000516523 104 ntBASIC2.72□□□□□ -1.97
SOX2P48431 AC109329.1-201ENST00000518744 317 ntBASIC2.72□□□□□ -1.97
SOX2P48431 AC022616.4-201ENST00000522985 181 ntBASIC2.72□□□□□ -1.97
SOX2P48431 AC007458.1-201ENST00000542812 373 ntBASIC2.72□□□□□ -1.97
SOX2P48431 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.72□□□□□ -1.97
SOX2P48431 AC073657.2-201ENST00000605661 303 ntBASIC2.72□□□□□ -1.97
SOX2P48431 AL159153.1-201ENST00000619688 317 ntBASIC2.72□□□□□ -1.97
SOX2P48431 UCA1.1-201ENST00000620952 75 ntBASIC2.72□□□□□ -1.97
SOX2P48431 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.72□□□□□ -1.97
SOX2P48431 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC2.72□□□□□ -1.97
SOX2P48431 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.72□□□□□ -1.97
SOX2P48431 AC091564.4-201ENST00000533934 2194 ntBASIC2.71□□□□□ -1.97
SOX2P48431 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.71□□□□□ -1.97
SOX2P48431 Y_RNA.358-201ENST00000365491 99 ntBASIC2.71□□□□□ -1.98
SOX2P48431 RNU6-17P-201ENST00000384245 107 ntBASIC2.71□□□□□ -1.98
SOX2P48431 RNU6-18P-201ENST00000384527 107 ntBASIC2.71□□□□□ -1.98
SOX2P48431 MIR554-201ENST00000384874 96 ntBASIC2.71□□□□□ -1.98
SOX2P48431 MIR153-2-201ENST00000385225 87 ntBASIC2.71□□□□□ -1.98
SOX2P48431 RNU6-823P-201ENST00000391042 103 ntBASIC2.71□□□□□ -1.98
SOX2P48431 SNORA26.3-201ENST00000391119 136 ntBASIC2.71□□□□□ -1.98
SOX2P48431 RNA5SP274-201ENST00000410484 108 ntBASIC2.71□□□□□ -1.98
SOX2P48431 AL590135.1-201ENST00000422215 156 ntBASIC2.71□□□□□ -1.98
SOX2P48431 AC019205.3-201ENST00000424573 156 ntBASIC2.71□□□□□ -1.98
SOX2P48431 AL358075.3-201ENST00000426289 226 ntBASIC2.71□□□□□ -1.98
SOX2P48431 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.71□□□□□ -1.98
SOX2P48431 MTND3P2-201ENST00000438452 342 ntBASIC2.71□□□□□ -1.98
SOX2P48431 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.71□□□□□ -1.98
SOX2P48431 RPL23AP58-201ENST00000440453 469 ntBASIC2.71□□□□□ -1.98
SOX2P48431 AC016700.2-201ENST00000446011 156 ntBASIC2.71□□□□□ -1.98
SOX2P48431 RN7SL542P-201ENST00000467147 294 ntBASIC2.71□□□□□ -1.98
SOX2P48431 RPL22P13-201ENST00000493291 347 ntBASIC2.71□□□□□ -1.98
SOX2P48431 AC093852.1-201ENST00000503587 266 ntBASIC2.71□□□□□ -1.98
SOX2P48431 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC2.71□□□□□ -1.98
SOX2P48431 RN7SKP43-201ENST00000516173 320 ntBASIC2.71□□□□□ -1.98
SOX2P48431 AC023632.4-201ENST00000517783 191 ntBASIC2.71□□□□□ -1.98
SOX2P48431 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
SOX2P48431 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.71□□□□□ -1.98
SOX2P48431 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.71□□□□□ -1.98
SOX2P48431 AC113195.1-201ENST00000579952 141 ntBASIC2.71□□□□□ -1.98
SOX2P48431 MIR3136-201ENST00000583498 78 ntBASIC2.71□□□□□ -1.98
SOX2P48431 Z98751.3-201ENST00000604447 521 ntBASIC2.71□□□□□ -1.98
SOX2P48431 AC124312.5-201ENST00000604451 268 ntBASIC2.71□□□□□ -1.98
SOX2P48431 AL137843.1-201ENST00000605078 385 ntBASIC2.71□□□□□ -1.98
SOX2P48431 U3.45-201ENST00000607547 219 ntBASIC2.71□□□□□ -1.98
SOX2P48431 AC069200.1-201ENST00000609511 323 ntBASIC2.71□□□□□ -1.98
SOX2P48431 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.71□□□□□ -1.98
SOX2P48431 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
SOX2P48431 AL355596.1-201ENST00000565399 3996 ntBASIC2.71□□□□□ -1.98
SOX2P48431 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
SOX2P48431 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.7□□□□□ -1.98
SOX2P48431 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
SOX2P48431 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
SOX2P48431 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
SOX2P48431 RNU6-1159P-201ENST00000362933 107 ntBASIC2.7□□□□□ -1.98
SOX2P48431 Y_RNA.106-201ENST00000363189 100 ntBASIC2.7□□□□□ -1.98
SOX2P48431 RNU6-450P-201ENST00000364654 107 ntBASIC2.7□□□□□ -1.98
SOX2P48431 RNU4-56P-201ENST00000364700 142 ntBASIC2.7□□□□□ -1.98
SOX2P48431 SNORA36A-201ENST00000384221 132 ntBASIC2.7□□□□□ -1.98
SOX2P48431 BMS1P22-201ENST00000414726 313 ntBASIC2.7□□□□□ -1.98
SOX2P48431 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.7□□□□□ -1.98
SOX2P48431 AL358176.2-201ENST00000425769 204 ntBASIC2.7□□□□□ -1.98
SOX2P48431 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC2.7□□□□□ -1.98
SOX2P48431 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.7□□□□□ -1.98
SOX2P48431 MTCO3P8-201ENST00000453691 755 ntBASIC2.7□□□□□ -1.98
SOX2P48431 RPL21P10-201ENST00000463521 490 ntBASIC2.7□□□□□ -1.98
SOX2P48431 AC090525.1-201ENST00000479116 478 ntBASIC2.7□□□□□ -1.98
SOX2P48431 RPL36AP48-201ENST00000485521 314 ntBASIC2.7□□□□□ -1.98
SOX2P48431 RN7SL20P-201ENST00000488827 297 ntBASIC2.7□□□□□ -1.98
SOX2P48431 AIG1P1-201ENST00000503376 148 ntBASIC2.7□□□□□ -1.98
SOX2P48431 ANXA2P1-201ENST00000505539 926 ntBASIC2.7□□□□□ -1.98
SOX2P48431 SLC25A15P5-201ENST00000508033 253 ntBASIC2.7□□□□□ -1.98
SOX2P48431 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
SOX2P48431 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC2.7□□□□□ -1.98
SOX2P48431 RAC1P5-201ENST00000512182 576 ntBASIC2.7□□□□□ -1.98
SOX2P48431 RNU6-567P-201ENST00000516746 107 ntBASIC2.7□□□□□ -1.98
SOX2P48431 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
SOX2P48431 AC040926.1-201ENST00000530195 238 ntBASIC2.7□□□□□ -1.98
SOX2P48431 AL117187.1-201ENST00000555482 181 ntBASIC2.7□□□□□ -1.98
SOX2P48431 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC2.7□□□□□ -1.98
SOX2P48431 MIR1254-2-201ENST00000579553 63 ntBASIC2.7□□□□□ -1.98
SOX2P48431 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.7□□□□□ -1.98
SOX2P48431 AC008121.3-201ENST00000618726 433 ntBASIC2.7□□□□□ -1.98
SOX2P48431 AC039056.2-201ENST00000622261 511 ntBASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 136.1 ms