Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 SNORA31.23-201ENST00000517219 133 ntBASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 HSPE1P4-201ENST00000550617 308 ntBASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 AC021739.1-201ENST00000559631 174 ntBASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 MIR3609-201ENST00000582661 80 ntBASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 AC025946.2-201ENST00000603398 234 ntBASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 SNORA43.4-201ENST00000629559 138 ntBASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 AL365361.1-201ENST00000566942 3481 ntBASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 AC073073.2-201ENST00000609827 2578 ntBASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC4.45□□□□□ -1.7
CCDC87Q9NVE4 AL356274.2-201ENST00000624379 3752 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 AC092268.1-201ENST00000342691 405 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 RNU4-90P-201ENST00000362773 141 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 RNU1-140P-201ENST00000365040 165 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 Y_RNA.319-201ENST00000365138 92 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 RNU6-487P-201ENST00000365430 104 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 RNU6-318P-201ENST00000384283 103 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 Y_RNA.504-201ENST00000384481 104 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 MIR544A-201ENST00000384855 91 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 HSPE1P26-201ENST00000405341 275 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 AC099548.1-201ENST00000421443 426 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 BPY2DP-201ENST00000422208 265 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 ATP6V0E1P4-201ENST00000427294 242 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 MTND5P15-201ENST00000434246 349 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 GPM6BP3-201ENST00000442797 145 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 Z75741.1-201ENST00000446793 314 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 SSXP4-201ENST00000451349 245 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 RPL27AP5-201ENST00000469428 449 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 RNU6-496P-201ENST00000516145 99 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 RN7SKP49-201ENST00000516675 260 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 RNU6-928P-201ENST00000516876 104 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 AC022080.3-201ENST00000544433 482 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 AC021231.3-201ENST00000558497 370 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 MIR5004-201ENST00000579078 107 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 AC073657.2-201ENST00000605661 303 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 AC004825.2-201ENST00000616634 455 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 AL450472.1-202ENST00000637286 180 ntBASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC87Q9NVE4 IDE-202ENST00000371581 4480 ntTSL 2 BASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 ADAM3A-203ENST00000461344 2157 ntBASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 SNORD115-8-201ENST00000363856 82 ntBASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 SNORD115-38-201ENST00000365037 82 ntBASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 RNU6-1062P-201ENST00000383908 107 ntBASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 RNU6-937P-201ENST00000384325 106 ntBASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 Y_RNA.541-201ENST00000384640 113 ntBASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 AL033519.2-201ENST00000403958 392 ntBASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 RNU2-37P-201ENST00000410695 177 ntBASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 SUMO1P2-201ENST00000452524 304 ntBASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 AL139109.1-201ENST00000455491 297 ntBASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 HMGN2P16-201ENST00000456802 261 ntBASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 RPS4XP22-201ENST00000480755 780 ntBASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 RPS26P15-201ENST00000488067 348 ntBASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 RN7SKP83-201ENST00000516512 178 ntBASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 RRN3P3-201ENST00000549207 578 ntBASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 AC027288.2-201ENST00000553028 243 ntBASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 AC010900.2-201ENST00000604508 210 ntBASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 BRDTP1-201ENST00000605735 677 ntBASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 AC005296.1-201ENST00000616145 209 ntBASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 MESTIT1_1.1-201ENST00000618871 140 ntBASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 AC073308.1-201ENST00000623696 305 ntBASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC87Q9NVE4 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 MAPK10-253ENST00000641010 4072 ntBASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 OTUD4P1-201ENST00000237841 3067 ntBASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 HSPA8P1-201ENST00000425843 1833 ntBASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 RNU6-1266P-201ENST00000362794 105 ntBASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 RNU5F-3P-201ENST00000363767 117 ntBASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 RNU6-290P-201ENST00000365212 101 ntBASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 U8.10-201ENST00000384260 133 ntBASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 U3.39-201ENST00000408569 239 ntBASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 Y_RNA.602-201ENST00000410535 92 ntBASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 RNU5A-5P-201ENST00000411054 116 ntBASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 AL358075.3-201ENST00000426289 226 ntBASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 AL136097.1-201ENST00000456945 913 ntBASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 RNA5SP310-201ENST00000459084 116 ntBASIC4.42□□□□□ -1.7
CCDC87Q9NVE4 GZMAP1-201ENST00000503054 631 ntBASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms