Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC5.06□□□□□ -1.6
NKX2-3Q8TAU0 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC5.06□□□□□ -1.6
NKX2-3Q8TAU0 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC5.06□□□□□ -1.6
NKX2-3Q8TAU0 AC069200.1-201ENST00000609511 323 ntBASIC5.06□□□□□ -1.6
NKX2-3Q8TAU0 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC5.06□□□□□ -1.6
NKX2-3Q8TAU0 AC022336.2-201ENST00000568966 2538 ntBASIC5.06□□□□□ -1.6
NKX2-3Q8TAU0 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
NKX2-3Q8TAU0 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
NKX2-3Q8TAU0 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
NKX2-3Q8TAU0 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
NKX2-3Q8TAU0 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
NKX2-3Q8TAU0 AP000542.2-201ENST00000623199 6179 ntBASIC5.05□□□□□ -1.6
NKX2-3Q8TAU0 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.05□□□□□ -1.6
NKX2-3Q8TAU0 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC5.05□□□□□ -1.6
NKX2-3Q8TAU0 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
NKX2-3Q8TAU0 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
NKX2-3Q8TAU0 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
NKX2-3Q8TAU0 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC5.05□□□□□ -1.6
NKX2-3Q8TAU0 MIR367-201ENST00000362299 68 ntBASIC5.05□□□□□ -1.6
NKX2-3Q8TAU0 RNU1-14P-201ENST00000362759 152 ntBASIC5.05□□□□□ -1.6
NKX2-3Q8TAU0 Y_RNA.310-201ENST00000365063 113 ntBASIC5.05□□□□□ -1.6
NKX2-3Q8TAU0 SNORA36A-201ENST00000384221 132 ntBASIC5.05□□□□□ -1.6
NKX2-3Q8TAU0 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
NKX2-3Q8TAU0 CYCSP49-201ENST00000420810 319 ntBASIC5.05□□□□□ -1.6
NKX2-3Q8TAU0 YME1L1P1-201ENST00000429435 297 ntBASIC5.05□□□□□ -1.6
NKX2-3Q8TAU0 AL356867.1-201ENST00000429623 299 ntBASIC5.05□□□□□ -1.6
NKX2-3Q8TAU0 AL133547.1-201ENST00000448546 220 ntBASIC5.05□□□□□ -1.6
NKX2-3Q8TAU0 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC5.05□□□□□ -1.6
NKX2-3Q8TAU0 RNU6-65P-201ENST00000516332 98 ntBASIC5.05□□□□□ -1.6
NKX2-3Q8TAU0 SNORA40.13-201ENST00000516379 120 ntBASIC5.05□□□□□ -1.6
NKX2-3Q8TAU0 AC093331.1-201ENST00000521474 169 ntBASIC5.05□□□□□ -1.6
NKX2-3Q8TAU0 CYCSP39-201ENST00000565821 309 ntBASIC5.05□□□□□ -1.6
NKX2-3Q8TAU0 MIR6867-201ENST00000610636 67 ntBASIC5.05□□□□□ -1.6
NKX2-3Q8TAU0 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
NKX2-3Q8TAU0 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
NKX2-3Q8TAU0 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
NKX2-3Q8TAU0 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
NKX2-3Q8TAU0 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 RNU6-173P-201ENST00000364215 104 ntBASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 RNU6-1107P-201ENST00000364817 104 ntBASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 RNU6-573P-201ENST00000383938 106 ntBASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 RNU6-136P-201ENST00000384663 107 ntBASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 SNORA26.3-201ENST00000391119 136 ntBASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 SNORA79-201ENST00000408376 140 ntBASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 AC012306.1-201ENST00000423267 114 ntBASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 HMGN2P32-201ENST00000444648 269 ntBASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 ABCF2P2-201ENST00000450549 296 ntBASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 AC026726.1-201ENST00000512859 601 ntBASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 AC025166.1-201ENST00000612411 163 ntBASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 CR392039.5-201ENST00000623201 510 ntBASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 U6.99-201ENST00000637524 83 ntBASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 AC004925.1-201ENST00000624256 2706 ntBASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC5.04□□□□□ -1.6
NKX2-3Q8TAU0 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
NKX2-3Q8TAU0 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
NKX2-3Q8TAU0 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC5.03□□□□□ -1.6
NKX2-3Q8TAU0 RNA5SP175-201ENST00000364275 119 ntBASIC5.03□□□□□ -1.6
NKX2-3Q8TAU0 Y_RNA.341-201ENST00000365341 102 ntBASIC5.03□□□□□ -1.6
NKX2-3Q8TAU0 RNU6-756P-201ENST00000383997 107 ntBASIC5.03□□□□□ -1.6
NKX2-3Q8TAU0 AC244098.2-201ENST00000422068 99 ntBASIC5.03□□□□□ -1.6
NKX2-3Q8TAU0 AC004386.2-201ENST00000441858 148 ntBASIC5.03□□□□□ -1.6
NKX2-3Q8TAU0 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC5.03□□□□□ -1.6
NKX2-3Q8TAU0 RN7SKP12-201ENST00000516275 143 ntBASIC5.03□□□□□ -1.6
NKX2-3Q8TAU0 RNU6-781P-201ENST00000516377 101 ntBASIC5.03□□□□□ -1.6
NKX2-3Q8TAU0 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC5.03□□□□□ -1.6
NKX2-3Q8TAU0 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC5.03□□□□□ -1.6
NKX2-3Q8TAU0 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC5.03□□□□□ -1.6
NKX2-3Q8TAU0 LINC00933-203ENST00000559812 219 ntBASIC5.03□□□□□ -1.6
NKX2-3Q8TAU0 MIR3921-201ENST00000577308 85 ntBASIC5.03□□□□□ -1.6
NKX2-3Q8TAU0 AC019159.1-201ENST00000605094 187 ntBASIC5.03□□□□□ -1.6
NKX2-3Q8TAU0 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
NKX2-3Q8TAU0 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
NKX2-3Q8TAU0 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
NKX2-3Q8TAU0 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
NKX2-3Q8TAU0 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
NKX2-3Q8TAU0 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
NKX2-3Q8TAU0 RNU6-799P-201ENST00000363567 107 ntBASIC5.02□□□□□ -1.61
NKX2-3Q8TAU0 RNU6-1152P-201ENST00000384576 107 ntBASIC5.02□□□□□ -1.61
NKX2-3Q8TAU0 MIR518D-201ENST00000385014 87 ntBASIC5.02□□□□□ -1.61
NKX2-3Q8TAU0 RNU5F-2P-201ENST00000516066 82 ntBASIC5.02□□□□□ -1.61
NKX2-3Q8TAU0 RNU6-703P-201ENST00000516946 107 ntBASIC5.02□□□□□ -1.61
NKX2-3Q8TAU0 AC006064.5-201ENST00000541782 248 ntBASIC5.02□□□□□ -1.61
NKX2-3Q8TAU0 TVP23BP1-201ENST00000557500 617 ntBASIC5.02□□□□□ -1.61
NKX2-3Q8TAU0 AC131055.1-201ENST00000584626 316 ntBASIC5.02□□□□□ -1.61
NKX2-3Q8TAU0 RPL30P11-203ENST00000598995 310 ntBASIC5.02□□□□□ -1.61
NKX2-3Q8TAU0 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
NKX2-3Q8TAU0 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 121.4 ms