Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SNORD99-201ENST00000408612 74 ntBASIC-0.07□□□□□ -2.42
CUX1P39880 RNU6-77P-201ENST00000410554 91 ntBASIC-0.07□□□□□ -2.42
CUX1P39880 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC-0.07□□□□□ -2.42
CUX1P39880 RAB28P5-201ENST00000427490 651 ntBASIC-0.07□□□□□ -2.42
CUX1P39880 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC-0.07□□□□□ -2.42
CUX1P39880 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC-0.07□□□□□ -2.42
CUX1P39880 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC-0.07□□□□□ -2.42
CUX1P39880 RPL32P14-201ENST00000463196 378 ntBASIC-0.07□□□□□ -2.42
CUX1P39880 AC097473.1-201ENST00000508142 408 ntBASIC-0.07□□□□□ -2.42
CUX1P39880 SUMO2P16-201ENST00000519475 264 ntBASIC-0.07□□□□□ -2.42
CUX1P39880 AC018630.3-201ENST00000542637 96 ntBASIC-0.07□□□□□ -2.42
CUX1P39880 AL158211.1-201ENST00000566763 763 ntBASIC-0.07□□□□□ -2.42
CUX1P39880 AL590229.1-201ENST00000603497 542 ntBASIC-0.07□□□□□ -2.42
CUX1P39880 LARP7P1-201ENST00000605576 316 ntBASIC-0.07□□□□□ -2.42
CUX1P39880 AC010133.1-201ENST00000615809 842 ntBASIC-0.07□□□□□ -2.42
CUX1P39880 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC-0.07□□□□□ -2.42
CUX1P39880 RNA5SP264-201ENST00000363115 107 ntBASIC-0.08□□□□□ -2.42
CUX1P39880 RNU4-45P-201ENST00000365469 141 ntBASIC-0.08□□□□□ -2.42
CUX1P39880 RNU6-1176P-201ENST00000390955 107 ntBASIC-0.08□□□□□ -2.42
CUX1P39880 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC-0.08□□□□□ -2.42
CUX1P39880 DNAJA1P2-201ENST00000421360 1197 ntBASIC-0.08□□□□□ -2.42
CUX1P39880 RAD1P2-201ENST00000446414 663 ntBASIC-0.08□□□□□ -2.42
CUX1P39880 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC-0.08□□□□□ -2.42
CUX1P39880 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC-0.08□□□□□ -2.42
CUX1P39880 RNA5SP437-201ENST00000517249 129 ntBASIC-0.08□□□□□ -2.42
CUX1P39880 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC-0.08□□□□□ -2.42
CUX1P39880 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC-0.08□□□□□ -2.42
CUX1P39880 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC-0.08□□□□□ -2.42
CUX1P39880 AC026371.1-201ENST00000551867 419 ntBASIC-0.08□□□□□ -2.42
CUX1P39880 AP002906.1-201ENST00000603405 233 ntBASIC-0.08□□□□□ -2.42
CUX1P39880 AC100812.1-201ENST00000607622 580 ntBASIC-0.08□□□□□ -2.42
CUX1P39880 AC073349.3-201ENST00000617616 186 ntBASIC-0.08□□□□□ -2.42
CUX1P39880 AC004009.2-201ENST00000623016 728 ntBASIC-0.08□□□□□ -2.42
CUX1P39880 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC-0.08□□□□□ -2.42
CUX1P39880 MIRLET7D-201ENST00000362263 87 ntBASIC-0.08□□□□□ -2.42
CUX1P39880 SNORA80D-201ENST00000384488 135 ntBASIC-0.08□□□□□ -2.42
CUX1P39880 RNU6-950P-201ENST00000384651 107 ntBASIC-0.08□□□□□ -2.42
CUX1P39880 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC-0.08□□□□□ -2.42
CUX1P39880 TXNL1P1-201ENST00000429528 554 ntBASIC-0.08□□□□□ -2.42
CUX1P39880 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC-0.08□□□□□ -2.42
CUX1P39880 BRK1P2-201ENST00000442875 223 ntBASIC-0.08□□□□□ -2.42
CUX1P39880 AL031313.1-201ENST00000448435 256 ntBASIC-0.08□□□□□ -2.42
CUX1P39880 OR6C5P-201ENST00000452388 923 ntBASIC-0.08□□□□□ -2.42
CUX1P39880 RNU1-131P-201ENST00000458943 161 ntBASIC-0.08□□□□□ -2.42
CUX1P39880 OARD1-209ENST00000471367 401 ntTSL 2 BASIC-0.08□□□□□ -2.42
CUX1P39880 RPS26P48-201ENST00000491713 339 ntBASIC-0.08□□□□□ -2.42
CUX1P39880 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC-0.08□□□□□ -2.42
CUX1P39880 AC137800.2-201ENST00000574375 120 ntBASIC-0.08□□□□□ -2.42
CUX1P39880 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC-0.08□□□□□ -2.42
CUX1P39880 AC092354.1-201ENST00000606057 376 ntBASIC-0.08□□□□□ -2.42
CUX1P39880 AC021506.2-201ENST00000612354 169 ntBASIC-0.08□□□□□ -2.42
CUX1P39880 MIR1248-201ENST00000629190 106 ntBASIC-0.08□□□□□ -2.42
CUX1P39880 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC-0.09□□□□□ -2.42
CUX1P39880 SNORD44.1-201ENST00000363202 61 ntBASIC-0.09□□□□□ -2.42
CUX1P39880 RNU6-969P-201ENST00000383900 105 ntBASIC-0.09□□□□□ -2.42
CUX1P39880 MIR153-2-201ENST00000385225 87 ntBASIC-0.09□□□□□ -2.42
CUX1P39880 AC060773.1-201ENST00000421698 310 ntBASIC-0.09□□□□□ -2.42
CUX1P39880 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC-0.09□□□□□ -2.42
CUX1P39880 FABP5P4-201ENST00000437203 171 ntBASIC-0.09□□□□□ -2.42
CUX1P39880 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC-0.09□□□□□ -2.42
CUX1P39880 AC004853.1-201ENST00000604902 698 ntBASIC-0.09□□□□□ -2.42
CUX1P39880 uc_338.6-201ENST00000613544 171 ntBASIC-0.09□□□□□ -2.42
CUX1P39880 AL118556.2-201ENST00000614375 824 ntBASIC-0.09□□□□□ -2.42
CUX1P39880 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC-0.1□□□□□ -2.43
CUX1P39880 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC-0.1□□□□□ -2.43
CUX1P39880 SNORD49B-201ENST00000365172 72 ntBASIC-0.1□□□□□ -2.43
CUX1P39880 AF228730.1-201ENST00000397972 663 ntBASIC-0.1□□□□□ -2.43
CUX1P39880 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC-0.1□□□□□ -2.43
CUX1P39880 RNU6-564P-201ENST00000410983 104 ntBASIC-0.1□□□□□ -2.43
CUX1P39880 AC019178.2-201ENST00000423595 505 ntBASIC-0.1□□□□□ -2.43
CUX1P39880 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC-0.1□□□□□ -2.43
CUX1P39880 MTND3P4-201ENST00000453537 303 ntBASIC-0.1□□□□□ -2.43
CUX1P39880 U7.7-201ENST00000459276 60 ntBASIC-0.1□□□□□ -2.43
CUX1P39880 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC-0.1□□□□□ -2.43
CUX1P39880 RN7SKP256-201ENST00000517201 314 ntBASIC-0.1□□□□□ -2.43
CUX1P39880 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC-0.1□□□□□ -2.43
CUX1P39880 AC073410.2-201ENST00000603240 332 ntBASIC-0.1□□□□□ -2.43
CUX1P39880 AC011451.2-201ENST00000604303 598 ntBASIC-0.1□□□□□ -2.43
CUX1P39880 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC-0.11□□□□□ -2.43
CUX1P39880 Y_RNA.363-201ENST00000365529 113 ntBASIC-0.11□□□□□ -2.43
CUX1P39880 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.11□□□□□ -2.43
CUX1P39880 SNX3P1X-201ENST00000414887 175 ntBASIC-0.11□□□□□ -2.43
CUX1P39880 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC-0.11□□□□□ -2.43
CUX1P39880 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC-0.11□□□□□ -2.43
CUX1P39880 AC245047.7-201ENST00000440265 293 ntBASIC-0.11□□□□□ -2.43
CUX1P39880 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC-0.11□□□□□ -2.43
CUX1P39880 NDUFB4P10-201ENST00000452541 359 ntBASIC-0.11□□□□□ -2.43
CUX1P39880 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC-0.11□□□□□ -2.43
CUX1P39880 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC-0.11□□□□□ -2.43
CUX1P39880 MTATP6P9-201ENST00000515039 680 ntBASIC-0.11□□□□□ -2.43
CUX1P39880 UTP23-205ENST00000520733 369 ntTSL 3 BASIC-0.11□□□□□ -2.43
CUX1P39880 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC-0.11□□□□□ -2.43
CUX1P39880 AL442163.3-201ENST00000554110 156 ntBASIC-0.11□□□□□ -2.43
CUX1P39880 AL136520.1-202ENST00000555494 763 ntBASIC-0.11□□□□□ -2.43
CUX1P39880 MIR4315-1-201ENST00000636800 73 ntBASIC-0.11□□□□□ -2.43
CUX1P39880 MIR4315-2-201ENST00000640925 73 ntBASIC-0.11□□□□□ -2.43
CUX1P39880 LINC02555-201ENST00000563933 1951 ntBASIC-0.11□□□□□ -2.43
CUX1P39880 RNU6-833P-201ENST00000363486 107 ntBASIC-0.12□□□□□ -2.43
CUX1P39880 RNU6-1019P-201ENST00000364424 107 ntBASIC-0.12□□□□□ -2.43
CUX1P39880 BX664727.1-201ENST00000416024 466 ntBASIC-0.12□□□□□ -2.43
Retrieved 100 of 98,524 protein–RNA pairs in 131 ms