Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 RNA5SP337-201ENST00000517007 109 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC0.62□□□□□ -2.31
CHD3Q12873 AP003484.1-201ENST00000530974 250 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 RAB11AP2-201ENST00000545905 639 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC0.62□□□□□ -2.31
CHD3Q12873 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC0.62□□□□□ -2.31
CHD3Q12873 MIR4711-201ENST00000578274 70 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 AC006927.4-201ENST00000639187 543 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
CHD3Q12873 MTND5P33-201ENST00000571250 1450 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 RNU5E-6P-201ENST00000365574 115 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 MIR19B1-201ENST00000384829 87 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 CBX3P9-201ENST00000402326 552 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 RNU6-1245P-201ENST00000411130 106 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 AC016831.2-201ENST00000417179 352 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 UBE2V1P8-201ENST00000437166 265 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 MTCO1P44-201ENST00000441935 243 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 MTCYBP42-201ENST00000444653 1130 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 MTCO2P25-201ENST00000447065 681 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 AK3P2-201ENST00000507976 429 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 RNU6-1225P-201ENST00000516336 65 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 RNU7-40P-201ENST00000516397 64 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 OR8K2P-201ENST00000524645 927 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 AP000763.2-201ENST00000540641 163 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC0.62□□□□□ -2.31
CHD3Q12873 AC130324.3-201ENST00000614165 542 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC0.62□□□□□ -2.31
CHD3Q12873 5S_rRNA.11-201ENST00000618635 84 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 AL136313.1-201ENST00000624804 202 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
CHD3Q12873 RNY3P13-201ENST00000365542 102 ntBASIC0.61□□□□□ -2.31
CHD3Q12873 SNORA25-201ENST00000384384 134 ntBASIC0.61□□□□□ -2.31
CHD3Q12873 MIR597-201ENST00000384968 97 ntBASIC0.61□□□□□ -2.31
CHD3Q12873 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC0.61□□□□□ -2.31
CHD3Q12873 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC0.61□□□□□ -2.31
CHD3Q12873 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC0.61□□□□□ -2.31
CHD3Q12873 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC0.61□□□□□ -2.31
CHD3Q12873 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC0.61□□□□□ -2.31
CHD3Q12873 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC0.61□□□□□ -2.31
CHD3Q12873 HAR1A.1-201ENST00000459583 118 ntBASIC0.61□□□□□ -2.31
CHD3Q12873 RPS26P55-201ENST00000471178 356 ntBASIC0.61□□□□□ -2.31
CHD3Q12873 AC117454.1-201ENST00000491120 168 ntBASIC0.61□□□□□ -2.31
CHD3Q12873 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC0.61□□□□□ -2.31
CHD3Q12873 AP003355.1-201ENST00000518956 587 ntBASIC0.61□□□□□ -2.31
CHD3Q12873 AC068587.4-201ENST00000533893 186 ntBASIC0.61□□□□□ -2.31
CHD3Q12873 MIR5094-201ENST00000578766 85 ntBASIC0.61□□□□□ -2.31
CHD3Q12873 VN1R87P-201ENST00000596706 487 ntBASIC0.61□□□□□ -2.31
CHD3Q12873 7SK.7-201ENST00000603504 247 ntBASIC0.61□□□□□ -2.31
CHD3Q12873 AL138889.2-201ENST00000603883 242 ntBASIC0.61□□□□□ -2.31
CHD3Q12873 AC007363.1-201ENST00000604736 620 ntBASIC0.61□□□□□ -2.31
CHD3Q12873 AC084824.5-201ENST00000612009 413 ntBASIC0.61□□□□□ -2.31
CHD3Q12873 AC013470.4-201ENST00000619978 986 ntBASIC0.61□□□□□ -2.31
CHD3Q12873 AC099654.5-201ENST00000636479 350 ntBASIC0.61□□□□□ -2.31
CHD3Q12873 MIR412-201ENST00000362142 91 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 RNU6-271P-201ENST00000363858 105 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 SNORA29-201ENST00000384183 140 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 RNU6-16P-201ENST00000384385 107 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 MIR100-201ENST00000385259 80 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 RNU6-1025P-201ENST00000410629 104 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 RNU6-1054P-201ENST00000411293 104 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 PIGPP2-201ENST00000411569 458 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC0.6□□□□□ -2.31
CHD3Q12873 FTH1P12-201ENST00000432137 551 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 AL135790.2-201ENST00000437701 267 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 PRPS1P1-201ENST00000445305 876 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 snoU13.27-201ENST00000459278 104 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 RNU11-2P-201ENST00000516898 142 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC0.6□□□□□ -2.31
CHD3Q12873 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
CHD3Q12873 MIR1273C-201ENST00000578669 77 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 AL356596.1-201ENST00000624230 379 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 AC008993.2-201ENST00000631744 806 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 MIR6866-201ENST00000638146 69 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 RNA5SP347-201ENST00000362445 119 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 RNU5A-8P-201ENST00000364102 114 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 RNU6-505P-201ENST00000384427 107 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 RNA5SP193-201ENST00000410353 107 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 RNA5SP511-201ENST00000410487 115 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 RN7SKP61-201ENST00000410642 295 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 CR769776.1-201ENST00000441254 787 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC0.6□□□□□ -2.31
CHD3Q12873 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.6□□□□□ -2.31
CHD3Q12873 AC067942.3-201ENST00000512025 362 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 RNA5SP395-201ENST00000516567 118 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 RNA5SP437-201ENST00000517249 129 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 AP003072.2-201ENST00000527756 676 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 AL512310.8-201ENST00000550183 120 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC0.6□□□□□ -2.31
CHD3Q12873 AP003465.2-201ENST00000602571 373 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 AC069114.2-201ENST00000604699 304 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 AL359547.2-201ENST00000615810 418 ntBASIC0.6□□□□□ -2.31
CHD3Q12873 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC0.59□□□□□ -2.31
CHD3Q12873 RNU6-1176P-201ENST00000390955 107 ntBASIC0.59□□□□□ -2.31
CHD3Q12873 RNA5SP390-201ENST00000410191 113 ntBASIC0.59□□□□□ -2.31
CHD3Q12873 MTND4P3-201ENST00000417829 541 ntBASIC0.59□□□□□ -2.31
CHD3Q12873 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC0.59□□□□□ -2.31
CHD3Q12873 AL365338.1-201ENST00000422282 858 ntBASIC0.59□□□□□ -2.31
CHD3Q12873 MTCYBP5-201ENST00000423752 1135 ntBASIC0.59□□□□□ -2.31
CHD3Q12873 MTND4P15-201ENST00000437913 1033 ntBASIC0.59□□□□□ -2.31
CHD3Q12873 AC104563.1-201ENST00000476147 376 ntBASIC0.59□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms