Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 Z69720.2-201ENST00000624755 279 ntBASIC1.64□□□□□ -2.15
RFX3P48380 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
RFX3P48380 SNORD48-201ENST00000364953 64 ntBASIC1.63□□□□□ -2.15
RFX3P48380 RNU4-48P-201ENST00000365559 182 ntBASIC1.63□□□□□ -2.15
RFX3P48380 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC1.63□□□□□ -2.15
RFX3P48380 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC1.63□□□□□ -2.15
RFX3P48380 CYCSP33-201ENST00000414485 327 ntBASIC1.63□□□□□ -2.15
RFX3P48380 AL591043.1-201ENST00000432461 424 ntBASIC1.63□□□□□ -2.15
RFX3P48380 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.63□□□□□ -2.15
RFX3P48380 MTND3P7-201ENST00000474435 343 ntBASIC1.63□□□□□ -2.15
RFX3P48380 RPL30P1-201ENST00000488676 339 ntBASIC1.63□□□□□ -2.15
RFX3P48380 MTCO3P28-201ENST00000513351 515 ntBASIC1.63□□□□□ -2.15
RFX3P48380 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.63□□□□□ -2.15
RFX3P48380 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC1.63□□□□□ -2.15
RFX3P48380 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC1.63□□□□□ -2.15
RFX3P48380 AC018630.3-201ENST00000542637 96 ntBASIC1.63□□□□□ -2.15
RFX3P48380 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.63□□□□□ -2.15
RFX3P48380 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC1.63□□□□□ -2.15
RFX3P48380 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.63□□□□□ -2.15
RFX3P48380 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC1.63□□□□□ -2.15
RFX3P48380 BNIP3P25-201ENST00000596023 559 ntBASIC1.63□□□□□ -2.15
RFX3P48380 AC011494.1-201ENST00000596454 237 ntBASIC1.63□□□□□ -2.15
RFX3P48380 BNIP3P10-201ENST00000605360 577 ntBASIC1.63□□□□□ -2.15
RFX3P48380 AC072046.2-201ENST00000618366 268 ntBASIC1.63□□□□□ -2.15
RFX3P48380 U4.7-201ENST00000638126 106 ntBASIC1.63□□□□□ -2.15
RFX3P48380 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
RFX3P48380 U3.4-201ENST00000363352 213 ntBASIC1.62□□□□□ -2.15
RFX3P48380 RNU6-743P-201ENST00000364151 106 ntBASIC1.62□□□□□ -2.15
RFX3P48380 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC1.62□□□□□ -2.15
RFX3P48380 SNORD14D-201ENST00000384390 87 ntBASIC1.62□□□□□ -2.15
RFX3P48380 RNU6-606P-201ENST00000384721 111 ntBASIC1.62□□□□□ -2.15
RFX3P48380 MIR1-2-201ENST00000384961 85 ntBASIC1.62□□□□□ -2.15
RFX3P48380 MIR764-201ENST00000390811 85 ntBASIC1.62□□□□□ -2.15
RFX3P48380 RNA5SP465-201ENST00000391195 109 ntBASIC1.62□□□□□ -2.15
RFX3P48380 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC1.62□□□□□ -2.15
RFX3P48380 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.62□□□□□ -2.15
RFX3P48380 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC1.62□□□□□ -2.15
RFX3P48380 AC007969.2-201ENST00000441891 191 ntBASIC1.62□□□□□ -2.15
RFX3P48380 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC1.62□□□□□ -2.15
RFX3P48380 AC079448.1-201ENST00000449377 373 ntBASIC1.62□□□□□ -2.15
RFX3P48380 MTND1P27-201ENST00000451117 902 ntBASIC1.62□□□□□ -2.15
RFX3P48380 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.62□□□□□ -2.15
RFX3P48380 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC1.62□□□□□ -2.15
RFX3P48380 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC1.62□□□□□ -2.15
RFX3P48380 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.62□□□□□ -2.15
RFX3P48380 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.62□□□□□ -2.15
RFX3P48380 GNAI2P1-201ENST00000541815 315 ntBASIC1.62□□□□□ -2.15
RFX3P48380 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC1.62□□□□□ -2.15
RFX3P48380 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.62□□□□□ -2.15
RFX3P48380 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.62□□□□□ -2.15
RFX3P48380 AC068790.2-201ENST00000602601 557 ntBASIC1.62□□□□□ -2.15
RFX3P48380 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.62□□□□□ -2.15
RFX3P48380 AC103810.8-201ENST00000607347 118 ntBASIC1.62□□□□□ -2.15
RFX3P48380 MIR6845-201ENST00000613182 61 ntBASIC1.62□□□□□ -2.15
RFX3P48380 AC091834.1-201ENST00000614543 472 ntBASIC1.62□□□□□ -2.15
RFX3P48380 AC063943.3-201ENST00000615562 356 ntBASIC1.62□□□□□ -2.15
RFX3P48380 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC1.62□□□□□ -2.15
RFX3P48380 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC1.62□□□□□ -2.15
RFX3P48380 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
RFX3P48380 Y_RNA.201-201ENST00000364052 96 ntBASIC1.61□□□□□ -2.15
RFX3P48380 Y_RNA.324-201ENST00000365165 102 ntBASIC1.61□□□□□ -2.15
RFX3P48380 RNU6-715P-201ENST00000365204 103 ntBASIC1.61□□□□□ -2.15
RFX3P48380 RNU6-1029P-201ENST00000384109 107 ntBASIC1.61□□□□□ -2.15
RFX3P48380 Y_RNA.480-201ENST00000384364 102 ntBASIC1.61□□□□□ -2.15
RFX3P48380 RNU6-1222P-201ENST00000384615 107 ntBASIC1.61□□□□□ -2.15
RFX3P48380 MIR1294-201ENST00000408503 142 ntBASIC1.61□□□□□ -2.15
RFX3P48380 RNA5SP501-201ENST00000410990 112 ntBASIC1.61□□□□□ -2.15
RFX3P48380 AC244505.5-201ENST00000443639 207 ntBASIC1.61□□□□□ -2.15
RFX3P48380 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC1.61□□□□□ -2.15
RFX3P48380 RPL39P29-201ENST00000447779 157 ntBASIC1.61□□□□□ -2.15
RFX3P48380 AC245102.2-201ENST00000448956 180 ntBASIC1.61□□□□□ -2.15
RFX3P48380 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC1.61□□□□□ -2.15
RFX3P48380 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC1.61□□□□□ -2.15
RFX3P48380 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.61□□□□□ -2.15
RFX3P48380 RNU6-991P-201ENST00000516168 107 ntBASIC1.61□□□□□ -2.15
RFX3P48380 RNU6-1178P-201ENST00000516674 107 ntBASIC1.61□□□□□ -2.15
RFX3P48380 AC109479.2-201ENST00000517842 174 ntBASIC1.61□□□□□ -2.15
RFX3P48380 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC1.61□□□□□ -2.15
RFX3P48380 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC1.61□□□□□ -2.15
RFX3P48380 AC115990.1-201ENST00000526957 301 ntBASIC1.61□□□□□ -2.15
RFX3P48380 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC1.61□□□□□ -2.15
RFX3P48380 AC091135.1-201ENST00000585943 307 ntBASIC1.61□□□□□ -2.15
RFX3P48380 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC1.61□□□□□ -2.15
RFX3P48380 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC1.61□□□□□ -2.15
RFX3P48380 AC009161.2-201ENST00000624626 138 ntBASIC1.61□□□□□ -2.15
RFX3P48380 MIR1248-201ENST00000629190 106 ntBASIC1.61□□□□□ -2.15
RFX3P48380 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
RFX3P48380 RNU6-527P-201ENST00000363425 104 ntBASIC1.6□□□□□ -2.15
RFX3P48380 RNU6-456P-201ENST00000384493 107 ntBASIC1.6□□□□□ -2.15
RFX3P48380 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC1.6□□□□□ -2.15
RFX3P48380 SRIP3-201ENST00000413200 219 ntBASIC1.6□□□□□ -2.15
RFX3P48380 BX295541.1-201ENST00000417774 250 ntBASIC1.6□□□□□ -2.15
RFX3P48380 EIF4EP2-201ENST00000422816 654 ntBASIC1.6□□□□□ -2.15
RFX3P48380 AL669831.1-202ENST00000428504 417 ntBASIC1.6□□□□□ -2.15
RFX3P48380 IFNA20P-201ENST00000436840 528 ntBASIC1.6□□□□□ -2.15
RFX3P48380 RPL7P54-201ENST00000438336 674 ntBASIC1.6□□□□□ -2.15
RFX3P48380 GTF2IP13-201ENST00000438487 386 ntBASIC1.6□□□□□ -2.15
RFX3P48380 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC1.6□□□□□ -2.15
RFX3P48380 KATNBL1P3-201ENST00000443475 909 ntBASIC1.6□□□□□ -2.15
RFX3P48380 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.6□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 117.4 ms