Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RNY1P11-201ENST00000363759 113 ntBASIC4.22□□□□□ -1.73
MSX1P28360 SNORA75.5-201ENST00000391291 81 ntBASIC4.22□□□□□ -1.73
MSX1P28360 RNA5SP397-201ENST00000391323 118 ntBASIC4.22□□□□□ -1.73
MSX1P28360 TOMM22P2-201ENST00000430735 237 ntBASIC4.22□□□□□ -1.73
MSX1P28360 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.22□□□□□ -1.73
MSX1P28360 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC4.22□□□□□ -1.73
MSX1P28360 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.22□□□□□ -1.73
MSX1P28360 RNU5E-3P-201ENST00000515913 68 ntBASIC4.22□□□□□ -1.73
MSX1P28360 AC027176.1-201ENST00000560204 514 ntBASIC4.22□□□□□ -1.73
MSX1P28360 MTND5P34-201ENST00000568888 325 ntBASIC4.22□□□□□ -1.73
MSX1P28360 TCL6_2.1-201ENST00000615162 119 ntBASIC4.22□□□□□ -1.73
MSX1P28360 AC018692.3-201ENST00000623929 123 ntBASIC4.22□□□□□ -1.73
MSX1P28360 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
MSX1P28360 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
MSX1P28360 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
MSX1P28360 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.21□□□□□ -1.73
MSX1P28360 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.73
MSX1P28360 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
MSX1P28360 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
MSX1P28360 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.21□□□□□ -1.74
MSX1P28360 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
MSX1P28360 MIR1193-201ENST00000408109 78 ntBASIC4.21□□□□□ -1.74
MSX1P28360 AL158823.1-201ENST00000418441 478 ntBASIC4.21□□□□□ -1.74
MSX1P28360 AC004975.1-201ENST00000428733 208 ntBASIC4.21□□□□□ -1.74
MSX1P28360 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.21□□□□□ -1.74
MSX1P28360 AC006199.1-201ENST00000548728 219 ntBASIC4.21□□□□□ -1.74
MSX1P28360 AC105129.1-201ENST00000560250 297 ntBASIC4.21□□□□□ -1.74
MSX1P28360 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.21□□□□□ -1.74
MSX1P28360 PCGEM1.1-201ENST00000613431 131 ntBASIC4.21□□□□□ -1.74
MSX1P28360 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC4.21□□□□□ -1.74
MSX1P28360 AC005562.2-201ENST00000618264 111 ntBASIC4.21□□□□□ -1.74
MSX1P28360 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.21□□□□□ -1.74
MSX1P28360 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
MSX1P28360 OR56B2P-202ENST00000641377 2453 ntBASIC4.21□□□□□ -1.74
MSX1P28360 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
MSX1P28360 MTND5P32-201ENST00000560711 1802 ntBASIC4.21□□□□□ -1.74
MSX1P28360 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
MSX1P28360 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.21□□□□□ -1.74
MSX1P28360 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.2□□□□□ -1.74
MSX1P28360 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
MSX1P28360 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC4.2□□□□□ -1.74
MSX1P28360 MIR367-201ENST00000362299 68 ntBASIC4.2□□□□□ -1.74
MSX1P28360 Y_RNA.309-201ENST00000365046 111 ntBASIC4.2□□□□□ -1.74
MSX1P28360 Y_RNA.361-201ENST00000365515 120 ntBASIC4.2□□□□□ -1.74
MSX1P28360 RNU4-43P-201ENST00000410628 137 ntBASIC4.2□□□□□ -1.74
MSX1P28360 AC004866.1-201ENST00000411748 78 ntBASIC4.2□□□□□ -1.74
MSX1P28360 AC009237.10-201ENST00000414112 510 ntBASIC4.2□□□□□ -1.74
MSX1P28360 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.2□□□□□ -1.74
MSX1P28360 AC108751.2-201ENST00000469993 231 ntBASIC4.2□□□□□ -1.74
MSX1P28360 RN7SKP21-201ENST00000516503 220 ntBASIC4.2□□□□□ -1.74
MSX1P28360 AC105137.2-201ENST00000569073 466 ntBASIC4.2□□□□□ -1.74
MSX1P28360 AC015912.2-201ENST00000571053 181 ntBASIC4.2□□□□□ -1.74
MSX1P28360 AL034555.1-201ENST00000604816 211 ntBASIC4.2□□□□□ -1.74
MSX1P28360 AC068724.3-201ENST00000625906 87 ntBASIC4.2□□□□□ -1.74
MSX1P28360 MIR3914-2-201ENST00000637339 95 ntBASIC4.2□□□□□ -1.74
MSX1P28360 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
MSX1P28360 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
MSX1P28360 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
MSX1P28360 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
MSX1P28360 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.19□□□□□ -1.74
MSX1P28360 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
MSX1P28360 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
MSX1P28360 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
MSX1P28360 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.19□□□□□ -1.74
MSX1P28360 IL33-203ENST00000456383 2501 ntTSL 5 BASIC4.19□□□□□ -1.74
MSX1P28360 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.19□□□□□ -1.74
MSX1P28360 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
MSX1P28360 SNORA25.7-201ENST00000364375 127 ntBASIC4.19□□□□□ -1.74
MSX1P28360 RNU6-147P-201ENST00000383983 107 ntBASIC4.19□□□□□ -1.74
MSX1P28360 MIR195-201ENST00000385194 87 ntBASIC4.19□□□□□ -1.74
MSX1P28360 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.19□□□□□ -1.74
MSX1P28360 SNORA48.5-201ENST00000391143 135 ntBASIC4.19□□□□□ -1.74
MSX1P28360 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
MSX1P28360 RNA5SP504-201ENST00000410676 117 ntBASIC4.19□□□□□ -1.74
MSX1P28360 RPEP3-201ENST00000425462 676 ntBASIC4.19□□□□□ -1.74
MSX1P28360 AL732292.1-201ENST00000426692 226 ntBASIC4.19□□□□□ -1.74
MSX1P28360 AC027124.2-201ENST00000428249 105 ntBASIC4.19□□□□□ -1.74
MSX1P28360 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC4.19□□□□□ -1.74
MSX1P28360 AC004386.2-201ENST00000441858 148 ntBASIC4.19□□□□□ -1.74
MSX1P28360 RN7SL132P-201ENST00000478131 296 ntBASIC4.19□□□□□ -1.74
MSX1P28360 RNA5SP154-201ENST00000516193 111 ntBASIC4.19□□□□□ -1.74
MSX1P28360 AC006254.2-201ENST00000603259 279 ntBASIC4.19□□□□□ -1.74
MSX1P28360 MIR6716-201ENST00000613413 80 ntBASIC4.19□□□□□ -1.74
MSX1P28360 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.19□□□□□ -1.74
MSX1P28360 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC4.19□□□□□ -1.74
MSX1P28360 U6.115-201ENST00000636045 103 ntBASIC4.19□□□□□ -1.74
MSX1P28360 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.19□□□□□ -1.74
MSX1P28360 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC4.19□□□□□ -1.74
MSX1P28360 FTO-223ENST00000640179 210 ntTSL 5 BASIC4.19□□□□□ -1.74
MSX1P28360 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
MSX1P28360 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.19□□□□□ -1.74
MSX1P28360 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
MSX1P28360 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.19□□□□□ -1.74
MSX1P28360 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
MSX1P28360 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.19□□□□□ -1.74
MSX1P28360 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.19□□□□□ -1.74
MSX1P28360 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC4.19□□□□□ -1.74
MSX1P28360 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
MSX1P28360 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.19□□□□□ -1.74
MSX1P28360 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 162.8 ms