Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL8A1P27658 RN7SL435P-201ENST00000584418 282 ntBASIC4.02□□□□□ -1.77
COL8A1P27658 AL137843.1-201ENST00000605078 385 ntBASIC4.02□□□□□ -1.77
COL8A1P27658 CR392039.5-201ENST00000623201 510 ntBASIC4.02□□□□□ -1.77
COL8A1P27658 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
COL8A1P27658 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
COL8A1P27658 AC107068.1-201ENST00000563286 4218 ntBASIC4.02□□□□□ -1.77
COL8A1P27658 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC4.02□□□□□ -1.77
COL8A1P27658 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC4.02□□□□□ -1.77
COL8A1P27658 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL8A1P27658 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
COL8A1P27658 MED23-203ENST00000368058 4576 ntTSL 5 BASIC4.02□□□□□ -1.77
COL8A1P27658 MARK2P15-201ENST00000432204 2186 ntBASIC4.02□□□□□ -1.77
COL8A1P27658 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL8A1P27658 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.01□□□□□ -1.77
COL8A1P27658 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.01□□□□□ -1.77
COL8A1P27658 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL8A1P27658 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL8A1P27658 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.01□□□□□ -1.77
COL8A1P27658 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL8A1P27658 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL8A1P27658 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.01□□□□□ -1.77
COL8A1P27658 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
COL8A1P27658 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL8A1P27658 RNU6-1014P-201ENST00000383940 103 ntBASIC4.01□□□□□ -1.77
COL8A1P27658 RNU2-55P-201ENST00000411146 174 ntBASIC4.01□□□□□ -1.77
COL8A1P27658 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC4.01□□□□□ -1.77
COL8A1P27658 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC4.01□□□□□ -1.77
COL8A1P27658 ATP6V0E1P4-201ENST00000427294 242 ntBASIC4.01□□□□□ -1.77
COL8A1P27658 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.01□□□□□ -1.77
COL8A1P27658 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC4.01□□□□□ -1.77
COL8A1P27658 AL162151.2-201ENST00000448875 158 ntBASIC4.01□□□□□ -1.77
COL8A1P27658 RPS17P2-201ENST00000461663 408 ntBASIC4.01□□□□□ -1.77
COL8A1P27658 RN7SL558P-201ENST00000497468 299 ntBASIC4.01□□□□□ -1.77
COL8A1P27658 MRPS36P2-201ENST00000512569 299 ntBASIC4.01□□□□□ -1.77
COL8A1P27658 RNA5SP395-201ENST00000516567 118 ntBASIC4.01□□□□□ -1.77
COL8A1P27658 AC107918.3-201ENST00000533272 382 ntBASIC4.01□□□□□ -1.77
COL8A1P27658 RNU6-94P-201ENST00000607728 107 ntBASIC4.01□□□□□ -1.77
COL8A1P27658 RMST_8.1-201ENST00000610287 165 ntBASIC4.01□□□□□ -1.77
COL8A1P27658 MIR6867-201ENST00000610636 67 ntBASIC4.01□□□□□ -1.77
COL8A1P27658 AC015914.2-201ENST00000618167 288 ntBASIC4.01□□□□□ -1.77
COL8A1P27658 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC4.01□□□□□ -1.77
COL8A1P27658 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
COL8A1P27658 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
COL8A1P27658 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
COL8A1P27658 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL8A1P27658 AL672167.1-204ENST00000641875 3017 ntBASIC4.01□□□□□ -1.77
COL8A1P27658 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.01□□□□□ -1.77
COL8A1P27658 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL8A1P27658 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
COL8A1P27658 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL8A1P27658 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL8A1P27658 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL8A1P27658 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
COL8A1P27658 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
COL8A1P27658 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL8A1P27658 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL8A1P27658 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL8A1P27658 ZNF720P1-201ENST00000562403 1939 ntBASIC4□□□□□ -1.77
COL8A1P27658 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4□□□□□ -1.77
COL8A1P27658 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
COL8A1P27658 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC4□□□□□ -1.77
COL8A1P27658 RNU6-508P-201ENST00000363231 103 ntBASIC4□□□□□ -1.77
COL8A1P27658 RNU6-1080P-201ENST00000383982 107 ntBASIC4□□□□□ -1.77
COL8A1P27658 RNU6-146P-201ENST00000384602 108 ntBASIC4□□□□□ -1.77
COL8A1P27658 MIR1290-201ENST00000408735 78 ntBASIC4□□□□□ -1.77
COL8A1P27658 SNORA36B-201ENST00000410438 131 ntBASIC4□□□□□ -1.77
COL8A1P27658 CKS1BP5-201ENST00000434172 273 ntBASIC4□□□□□ -1.77
COL8A1P27658 SNORA59A-201ENST00000459326 152 ntBASIC4□□□□□ -1.77
COL8A1P27658 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC4□□□□□ -1.77
COL8A1P27658 RNA5SP154-201ENST00000516193 111 ntBASIC4□□□□□ -1.77
COL8A1P27658 AC136601.2-201ENST00000604356 474 ntBASIC4□□□□□ -1.77
COL8A1P27658 AC025754.2-201ENST00000606491 432 ntBASIC4□□□□□ -1.77
COL8A1P27658 MIR548AY-201ENST00000617669 107 ntBASIC4□□□□□ -1.77
COL8A1P27658 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4□□□□□ -1.77
COL8A1P27658 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
COL8A1P27658 AC107027.3-201ENST00000565095 3473 ntBASIC4□□□□□ -1.77
COL8A1P27658 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC4□□□□□ -1.77
COL8A1P27658 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC4□□□□□ -1.77
COL8A1P27658 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4□□□□□ -1.77
COL8A1P27658 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
COL8A1P27658 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
COL8A1P27658 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4□□□□□ -1.77
COL8A1P27658 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4□□□□□ -1.77
COL8A1P27658 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4□□□□□ -1.77
COL8A1P27658 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL8A1P27658 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC3.99□□□□□ -1.77
COL8A1P27658 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL8A1P27658 RNU6-228P-201ENST00000362700 106 ntBASIC3.99□□□□□ -1.77
COL8A1P27658 Y_RNA.49-201ENST00000362714 112 ntBASIC3.99□□□□□ -1.77
COL8A1P27658 RNA5SP513-201ENST00000364648 118 ntBASIC3.99□□□□□ -1.77
COL8A1P27658 Y_RNA.432-201ENST00000384087 111 ntBASIC3.99□□□□□ -1.77
COL8A1P27658 U1.1-201ENST00000384101 164 ntBASIC3.99□□□□□ -1.77
COL8A1P27658 SNORA9-201ENST00000384215 133 ntBASIC3.99□□□□□ -1.77
COL8A1P27658 MIR570-201ENST00000384917 97 ntBASIC3.99□□□□□ -1.77
COL8A1P27658 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
COL8A1P27658 RNU6ATAC-201ENST00000408749 126 ntBASIC3.99□□□□□ -1.77
COL8A1P27658 RN7SKP177-201ENST00000410567 355 ntBASIC3.99□□□□□ -1.77
COL8A1P27658 RNA5SP225-201ENST00000410874 135 ntBASIC3.99□□□□□ -1.77
COL8A1P27658 EIF4A1P3-201ENST00000411521 244 ntBASIC3.99□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms