Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 MIR3941-201ENST00000582572 103 ntBASIC1.93□□□□□ -2.1
SDC1P18827 AC091135.1-201ENST00000585943 307 ntBASIC1.93□□□□□ -2.1
SDC1P18827 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC1.93□□□□□ -2.1
SDC1P18827 AC015540.1-201ENST00000615828 501 ntBASIC1.93□□□□□ -2.1
SDC1P18827 AC007792.1-201ENST00000623023 402 ntBASIC1.93□□□□□ -2.1
SDC1P18827 RNU4-66P-201ENST00000365199 138 ntBASIC1.92□□□□□ -2.1
SDC1P18827 RNU6-827P-201ENST00000365553 106 ntBASIC1.92□□□□□ -2.1
SDC1P18827 Y_RNA.378-201ENST00000365652 113 ntBASIC1.92□□□□□ -2.1
SDC1P18827 RNU6-692P-201ENST00000384496 107 ntBASIC1.92□□□□□ -2.1
SDC1P18827 RNU6-1274P-201ENST00000384557 107 ntBASIC1.92□□□□□ -2.1
SDC1P18827 SNORA64-201ENST00000384674 134 ntBASIC1.92□□□□□ -2.1
SDC1P18827 CBX3P9-201ENST00000402326 552 ntBASIC1.92□□□□□ -2.1
SDC1P18827 RNU2-40P-201ENST00000410833 196 ntBASIC1.92□□□□□ -2.1
SDC1P18827 RNU6-293P-201ENST00000411259 106 ntBASIC1.92□□□□□ -2.1
SDC1P18827 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC1.92□□□□□ -2.1
SDC1P18827 AL356320.1-201ENST00000429616 163 ntBASIC1.92□□□□□ -2.1
SDC1P18827 IPO7P1-201ENST00000442031 636 ntBASIC1.92□□□□□ -2.1
SDC1P18827 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.92□□□□□ -2.1
SDC1P18827 AL353752.1-201ENST00000454946 260 ntBASIC1.92□□□□□ -2.1
SDC1P18827 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC1.92□□□□□ -2.1
SDC1P18827 AC018868.1-201ENST00000491307 315 ntBASIC1.92□□□□□ -2.1
SDC1P18827 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC1.92□□□□□ -2.1
SDC1P18827 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC1.92□□□□□ -2.1
SDC1P18827 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC1.92□□□□□ -2.1
SDC1P18827 SNORA14.1-201ENST00000516113 141 ntBASIC1.92□□□□□ -2.1
SDC1P18827 Y_RNA.704-201ENST00000516851 102 ntBASIC1.92□□□□□ -2.1
SDC1P18827 RNU6-586P-201ENST00000517265 104 ntBASIC1.92□□□□□ -2.1
SDC1P18827 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC1.92□□□□□ -2.1
SDC1P18827 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC1.92□□□□□ -2.1
SDC1P18827 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.92□□□□□ -2.1
SDC1P18827 AC103996.1-201ENST00000555468 102 ntBASIC1.92□□□□□ -2.1
SDC1P18827 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC1.92□□□□□ -2.1
SDC1P18827 AC025165.5-201ENST00000602802 578 ntBASIC1.92□□□□□ -2.1
SDC1P18827 AC107304.1-201ENST00000604229 296 ntBASIC1.92□□□□□ -2.1
SDC1P18827 RNU6-85P-201ENST00000605989 107 ntBASIC1.92□□□□□ -2.1
SDC1P18827 AF250324.2-201ENST00000608299 610 ntBASIC1.92□□□□□ -2.1
SDC1P18827 Y_RNA.783-201ENST00000613546 102 ntBASIC1.92□□□□□ -2.1
SDC1P18827 AC008121.3-201ENST00000618726 433 ntBASIC1.92□□□□□ -2.1
SDC1P18827 AC090517.3-201ENST00000625170 141 ntBASIC1.92□□□□□ -2.1
SDC1P18827 AC099654.12-201ENST00000639868 649 ntBASIC1.92□□□□□ -2.1
SDC1P18827 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC1.91□□□□□ -2.1
SDC1P18827 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC1.91□□□□□ -2.1
SDC1P18827 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
SDC1P18827 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC1.91□□□□□ -2.1
SDC1P18827 U3.13-201ENST00000364804 214 ntBASIC1.91□□□□□ -2.1
SDC1P18827 SNORD116-4-201ENST00000384733 96 ntBASIC1.91□□□□□ -2.1
SDC1P18827 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
SDC1P18827 RPS29P13-201ENST00000402041 169 ntBASIC1.91□□□□□ -2.1
SDC1P18827 POLHP1-201ENST00000411806 470 ntBASIC1.91□□□□□ -2.1
SDC1P18827 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC1.91□□□□□ -2.1
SDC1P18827 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.91□□□□□ -2.1
SDC1P18827 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC1.91□□□□□ -2.1
SDC1P18827 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC1.91□□□□□ -2.1
SDC1P18827 AC124916.1-201ENST00000444020 547 ntBASIC1.91□□□□□ -2.1
SDC1P18827 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC1.91□□□□□ -2.1
SDC1P18827 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC1.91□□□□□ -2.1
SDC1P18827 RPL30P1-201ENST00000488676 339 ntBASIC1.91□□□□□ -2.1
SDC1P18827 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.91□□□□□ -2.1
SDC1P18827 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.91□□□□□ -2.1
SDC1P18827 RNU6-189P-201ENST00000516120 101 ntBASIC1.91□□□□□ -2.1
SDC1P18827 RNU6-506P-201ENST00000516553 94 ntBASIC1.91□□□□□ -2.1
SDC1P18827 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.91□□□□□ -2.1
SDC1P18827 CYCSP27-201ENST00000527643 293 ntBASIC1.91□□□□□ -2.1
SDC1P18827 HMGB1P33-201ENST00000563485 527 ntBASIC1.91□□□□□ -2.1
SDC1P18827 BNIP3P16-201ENST00000589779 534 ntBASIC1.91□□□□□ -2.1
SDC1P18827 AC092747.3-201ENST00000603769 301 ntBASIC1.91□□□□□ -2.1
SDC1P18827 AC103705.1-201ENST00000619013 241 ntBASIC1.91□□□□□ -2.1
SDC1P18827 AC012640.5-201ENST00000623897 319 ntBASIC1.91□□□□□ -2.1
SDC1P18827 IGHVIII-44-202ENST00000636235 289 ntBASIC1.91□□□□□ -2.1
SDC1P18827 AC241585.2-209ENST00000638217 143 ntBASIC1.91□□□□□ -2.1
SDC1P18827 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.91□□□□□ -2.1
SDC1P18827 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.9□□□□□ -2.1
SDC1P18827 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.9□□□□□ -2.1
SDC1P18827 snoU2_19.1-201ENST00000362361 80 ntBASIC1.9□□□□□ -2.11
SDC1P18827 RNU6-1285P-201ENST00000363480 105 ntBASIC1.9□□□□□ -2.11
SDC1P18827 RNU6-82P-201ENST00000363970 107 ntBASIC1.9□□□□□ -2.11
SDC1P18827 RNU6-483P-201ENST00000384088 108 ntBASIC1.9□□□□□ -2.11
SDC1P18827 SNORA67.3-201ENST00000384366 140 ntBASIC1.9□□□□□ -2.11
SDC1P18827 RNU6-1222P-201ENST00000384615 107 ntBASIC1.9□□□□□ -2.11
SDC1P18827 MIR514A2-201ENST00000385131 88 ntBASIC1.9□□□□□ -2.11
SDC1P18827 MIR514A3-201ENST00000385132 88 ntBASIC1.9□□□□□ -2.11
SDC1P18827 SNORD73A-201ENST00000386062 65 ntBASIC1.9□□□□□ -2.11
SDC1P18827 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
SDC1P18827 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
SDC1P18827 RN7SKP32-201ENST00000410167 303 ntBASIC1.9□□□□□ -2.11
SDC1P18827 RN7SKP158-201ENST00000410453 326 ntBASIC1.9□□□□□ -2.11
SDC1P18827 RNU6-1068P-201ENST00000410958 103 ntBASIC1.9□□□□□ -2.11
SDC1P18827 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC1.9□□□□□ -2.11
SDC1P18827 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
SDC1P18827 TIMM9P3-201ENST00000428659 274 ntBASIC1.9□□□□□ -2.11
SDC1P18827 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC1.9□□□□□ -2.11
SDC1P18827 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC1.9□□□□□ -2.11
SDC1P18827 AC009238.1-201ENST00000442165 424 ntBASIC1.9□□□□□ -2.11
SDC1P18827 AC009237.6-201ENST00000446969 424 ntBASIC1.9□□□□□ -2.11
SDC1P18827 MTND3P16-201ENST00000452205 344 ntBASIC1.9□□□□□ -2.11
SDC1P18827 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.9□□□□□ -2.11
SDC1P18827 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
SDC1P18827 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.9□□□□□ -2.11
SDC1P18827 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.9□□□□□ -2.11
SDC1P18827 CYCSP26-201ENST00000534107 320 ntBASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms