Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AC021269.2-201ENST00000532318 330 ntBASIC3.95□□□□□ -1.78
HIF3AQ9Y2N7 AC079587.1-201ENST00000603846 277 ntBASIC3.95□□□□□ -1.78
HIF3AQ9Y2N7 AL591034.3-201ENST00000605511 685 ntBASIC3.95□□□□□ -1.78
HIF3AQ9Y2N7 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.95□□□□□ -1.78
HIF3AQ9Y2N7 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HIF3AQ9Y2N7 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HIF3AQ9Y2N7 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HIF3AQ9Y2N7 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 AC099654.7-201ENST00000635788 2127 ntBASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 RNU6-793P-201ENST00000384233 104 ntBASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 RNU6-1248P-201ENST00000391096 64 ntBASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 SNORA26.3-201ENST00000391119 136 ntBASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 HSPE1P12-201ENST00000412576 301 ntBASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 AC012306.1-201ENST00000423267 114 ntBASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 RPL39P29-201ENST00000447779 157 ntBASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 RPS23P7-201ENST00000466210 444 ntBASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 UQCRHP4-201ENST00000471686 272 ntBASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 RPS29P20-201ENST00000489592 171 ntBASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 IGKV2D-19-201ENST00000523346 262 ntBASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 AC011602.1-201ENST00000546484 331 ntBASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 AC021739.1-201ENST00000559631 174 ntBASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 AC090877.1-201ENST00000561418 344 ntBASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 MIR4744-201ENST00000581563 82 ntBASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 MIR3674-201ENST00000636576 68 ntBASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 AC068700.1-201ENST00000565862 3754 ntBASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 AC068254.2-201ENST00000623938 3577 ntBASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
HIF3AQ9Y2N7 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 AL672296.1-201ENST00000427780 2158 ntBASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 ADAM3A-203ENST00000461344 2157 ntBASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 AC134026.1-201ENST00000623249 2239 ntBASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 RNU1-94P-201ENST00000362627 173 ntBASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 RNU6-899P-201ENST00000363947 107 ntBASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 Y_RNA.293-201ENST00000364908 93 ntBASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 RNU6-487P-201ENST00000365430 104 ntBASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 MIR539-201ENST00000365690 78 ntBASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 Y_RNA.572-201ENST00000384757 98 ntBASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 YPEL5P1-201ENST00000419731 367 ntBASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 RPL7AP28-201ENST00000464513 571 ntBASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 RN7SKP164-201ENST00000516138 266 ntBASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 SNORA31.16-201ENST00000516773 139 ntBASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 RNU6-928P-201ENST00000516876 104 ntBASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 AP005019.3-201ENST00000620418 560 ntBASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HIF3AQ9Y2N7 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 AC126755.2-208ENST00000327792 462 ntBASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 AC138969.1-213ENST00000331436 462 ntBASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 RNA5SP28-201ENST00000363841 119 ntBASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 RNU6-1310P-201ENST00000384153 107 ntBASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 RNA5SP475-201ENST00000410568 110 ntBASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 BPY2DP-201ENST00000422208 265 ntBASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 HLA-N-201ENST00000437516 135 ntBASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 AC074290.1-201ENST00000448883 135 ntBASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 EEF1B2P7-201ENST00000451177 676 ntBASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 RNU6-1007P-201ENST00000516586 107 ntBASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 CYP4A43P-201ENST00000568156 121 ntBASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 AC090897.2-201ENST00000581715 130 ntBASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 IPO5P1-202ENST00000600039 287 ntBASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 AC011603.4-201ENST00000611325 277 ntBASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 RN7SL722P-201ENST00000617780 284 ntBASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 RN7SL565P-201ENST00000618246 284 ntBASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms