Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AP001486.1-201ENST00000463339 476 ntBASIC2.05□□□□□ -2.08
FOXA2Q9Y261 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.05□□□□□ -2.08
FOXA2Q9Y261 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC2.05□□□□□ -2.08
FOXA2Q9Y261 MTND3P5-201ENST00000512798 333 ntBASIC2.05□□□□□ -2.08
FOXA2Q9Y261 RNU6-965P-201ENST00000516721 96 ntBASIC2.05□□□□□ -2.08
FOXA2Q9Y261 AC243972.3-201ENST00000539655 198 ntBASIC2.05□□□□□ -2.08
FOXA2Q9Y261 AC090115.3-201ENST00000553218 849 ntBASIC2.05□□□□□ -2.08
FOXA2Q9Y261 NDUFAF4P1-201ENST00000559425 519 ntBASIC2.05□□□□□ -2.08
FOXA2Q9Y261 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.05□□□□□ -2.08
FOXA2Q9Y261 AC233702.2-202ENST00000562547 291 ntBASIC2.05□□□□□ -2.08
FOXA2Q9Y261 VN1R107P-201ENST00000601784 209 ntBASIC2.05□□□□□ -2.08
FOXA2Q9Y261 AP001330.5-201ENST00000607176 411 ntBASIC2.05□□□□□ -2.08
FOXA2Q9Y261 AC104073.3-201ENST00000610942 955 ntBASIC2.05□□□□□ -2.08
FOXA2Q9Y261 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
FOXA2Q9Y261 AC048344.4-201ENST00000619744 527 ntBASIC2.05□□□□□ -2.08
FOXA2Q9Y261 YWHAEP7-203ENST00000622054 312 ntBASIC2.05□□□□□ -2.08
FOXA2Q9Y261 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
FOXA2Q9Y261 SNORD115-3-201ENST00000363100 82 ntBASIC2.04□□□□□ -2.08
FOXA2Q9Y261 RNU6-1285P-201ENST00000363480 105 ntBASIC2.04□□□□□ -2.08
FOXA2Q9Y261 RNU6-1141P-201ENST00000364520 107 ntBASIC2.04□□□□□ -2.08
FOXA2Q9Y261 RNU4-66P-201ENST00000365199 138 ntBASIC2.04□□□□□ -2.08
FOXA2Q9Y261 RNU6-43P-201ENST00000384302 107 ntBASIC2.04□□□□□ -2.08
FOXA2Q9Y261 RPL17P50-201ENST00000396131 546 ntBASIC2.04□□□□□ -2.08
FOXA2Q9Y261 HMGN2P39-201ENST00000398005 273 ntBASIC2.04□□□□□ -2.08
FOXA2Q9Y261 RNU2-52P-201ENST00000410680 190 ntBASIC2.04□□□□□ -2.08
FOXA2Q9Y261 RNU2-16P-201ENST00000410712 136 ntBASIC2.04□□□□□ -2.08
FOXA2Q9Y261 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.04□□□□□ -2.08
FOXA2Q9Y261 AC010975.2-201ENST00000427781 588 ntBASIC2.04□□□□□ -2.08
FOXA2Q9Y261 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC2.04□□□□□ -2.08
FOXA2Q9Y261 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.04□□□□□ -2.08
FOXA2Q9Y261 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.04□□□□□ -2.08
FOXA2Q9Y261 MTCO3P38-201ENST00000468910 766 ntBASIC2.04□□□□□ -2.08
FOXA2Q9Y261 AC055731.1-201ENST00000474387 401 ntBASIC2.04□□□□□ -2.08
FOXA2Q9Y261 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.04□□□□□ -2.08
FOXA2Q9Y261 AC107401.1-201ENST00000503426 685 ntBASIC2.04□□□□□ -2.08
FOXA2Q9Y261 AC022447.4-201ENST00000504053 364 ntBASIC2.04□□□□□ -2.08
FOXA2Q9Y261 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.04□□□□□ -2.08
FOXA2Q9Y261 CCDC34P1-201ENST00000507441 517 ntBASIC2.04□□□□□ -2.08
FOXA2Q9Y261 RNU2-19P-201ENST00000517288 84 ntBASIC2.04□□□□□ -2.08
FOXA2Q9Y261 AC104383.1-201ENST00000530297 370 ntBASIC2.04□□□□□ -2.08
FOXA2Q9Y261 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.04□□□□□ -2.08
FOXA2Q9Y261 VN1R80P-201ENST00000597126 338 ntBASIC2.04□□□□□ -2.08
FOXA2Q9Y261 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.04□□□□□ -2.08
FOXA2Q9Y261 AL034555.1-201ENST00000604816 211 ntBASIC2.04□□□□□ -2.08
FOXA2Q9Y261 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC2.04□□□□□ -2.08
FOXA2Q9Y261 AC069528.2-201ENST00000624849 1991 ntBASIC2.04□□□□□ -2.08
FOXA2Q9Y261 SNORD98-201ENST00000636377 67 ntBASIC2.04□□□□□ -2.08
FOXA2Q9Y261 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.04□□□□□ -2.08
FOXA2Q9Y261 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC2.04□□□□□ -2.08
FOXA2Q9Y261 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
FOXA2Q9Y261 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.03□□□□□ -2.08
FOXA2Q9Y261 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.03□□□□□ -2.08
FOXA2Q9Y261 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
FOXA2Q9Y261 RNU6-1085P-201ENST00000363576 107 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 RNU6-743P-201ENST00000364151 106 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 RNU4-56P-201ENST00000364700 142 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 OR5H15-201ENST00000383696 930 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 RNU6-611P-201ENST00000384276 104 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 Y_RNA.559-201ENST00000384686 107 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 MIR144-201ENST00000384886 86 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 MIR23A-201ENST00000385245 73 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 SNORA40.19-201ENST00000390846 128 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 MTCO3P40-201ENST00000392516 676 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 RPS29P13-201ENST00000402041 169 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 RNA5SP181-201ENST00000410246 98 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC2.03□□□□□ -2.08
FOXA2Q9Y261 AC244670.1-201ENST00000436879 112 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 PSPHP1-201ENST00000450062 261 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.03□□□□□ -2.08
FOXA2Q9Y261 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC2.03□□□□□ -2.08
FOXA2Q9Y261 TPTE2P5-203ENST00000458118 728 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 RNU7-138P-201ENST00000459479 64 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.03□□□□□ -2.08
FOXA2Q9Y261 AC083798.1-201ENST00000472671 131 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 AL049873.1-201ENST00000480540 376 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 HMGB1P35-201ENST00000503360 598 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
FOXA2Q9Y261 RNU4-29P-201ENST00000515943 174 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.03□□□□□ -2.08
FOXA2Q9Y261 AC018630.3-201ENST00000542637 96 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.03□□□□□ -2.08
FOXA2Q9Y261 HSPE1P4-201ENST00000550617 308 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 AC024909.2-201ENST00000553035 286 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 MIR3136-201ENST00000583498 78 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 AC007621.1-201ENST00000604544 437 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 AC009090.3-201ENST00000616553 565 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 SCARNA15.3-201ENST00000626315 122 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 SCARNA4.1-201ENST00000628597 123 ntBASIC2.03□□□□□ -2.08
FOXA2Q9Y261 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
FOXA2Q9Y261 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.03□□□□□ -2.08
FOXA2Q9Y261 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
FOXA2Q9Y261 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.02□□□□□ -2.09
FOXA2Q9Y261 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
FOXA2Q9Y261 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
FOXA2Q9Y261 RNA5SP456-201ENST00000364002 114 ntBASIC2.02□□□□□ -2.09
FOXA2Q9Y261 SNORA16B-201ENST00000364674 135 ntBASIC2.02□□□□□ -2.09
FOXA2Q9Y261 U8.8-201ENST00000365399 135 ntBASIC2.02□□□□□ -2.09
FOXA2Q9Y261 SNORA69-201ENST00000383895 132 ntBASIC2.02□□□□□ -2.09
FOXA2Q9Y261 BTF3L4P2-201ENST00000392798 346 ntBASIC2.02□□□□□ -2.09
FOXA2Q9Y261 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms