Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 MIR626-201ENST00000385032 94 ntBASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 RNA5SP171-201ENST00000391071 115 ntBASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 AC004386.2-201ENST00000441858 148 ntBASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 APOA2-205ENST00000468465 421 ntTSL 2 BASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 AP002884.2-201ENST00000471647 395 ntBASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 RN7SL132P-201ENST00000478131 296 ntBASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 RPL23AP53-201ENST00000521854 457 ntBASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 AC006130.2-201ENST00000586202 326 ntBASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 Y_RNA.802-201ENST00000614892 130 ntBASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 NEAT1-202ENST00000501122 22743 ntBASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 LINC01355-201ENST00000566551 5444 ntBASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
LIMD1Q9UGP4 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
LIMD1Q9UGP4 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC4.78□□□□□ -1.64
LIMD1Q9UGP4 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
LIMD1Q9UGP4 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.78□□□□□ -1.64
LIMD1Q9UGP4 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
LIMD1Q9UGP4 Y_RNA.243-201ENST00000364481 109 ntBASIC4.78□□□□□ -1.64
LIMD1Q9UGP4 Y_RNA.293-201ENST00000364908 93 ntBASIC4.78□□□□□ -1.64
LIMD1Q9UGP4 SNORA72.4-201ENST00000384174 132 ntBASIC4.78□□□□□ -1.64
LIMD1Q9UGP4 AL591034.1-201ENST00000407447 340 ntBASIC4.78□□□□□ -1.64
LIMD1Q9UGP4 RNA5SP317-201ENST00000410176 116 ntBASIC4.78□□□□□ -1.64
LIMD1Q9UGP4 RNA5SP311-201ENST00000411290 116 ntBASIC4.78□□□□□ -1.64
LIMD1Q9UGP4 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.78□□□□□ -1.64
LIMD1Q9UGP4 AC027124.2-201ENST00000428249 105 ntBASIC4.78□□□□□ -1.64
LIMD1Q9UGP4 RN7SKP46-201ENST00000515942 234 ntBASIC4.78□□□□□ -1.64
LIMD1Q9UGP4 RNA5SP315-201ENST00000516340 116 ntBASIC4.78□□□□□ -1.64
LIMD1Q9UGP4 RNA5SP312-201ENST00000517068 116 ntBASIC4.78□□□□□ -1.64
LIMD1Q9UGP4 AC023632.4-201ENST00000517783 191 ntBASIC4.78□□□□□ -1.64
LIMD1Q9UGP4 AP003730.1-201ENST00000524605 285 ntBASIC4.78□□□□□ -1.64
LIMD1Q9UGP4 MIR5006-201ENST00000583027 110 ntBASIC4.78□□□□□ -1.64
LIMD1Q9UGP4 HSPE1P7-201ENST00000604681 321 ntBASIC4.78□□□□□ -1.64
LIMD1Q9UGP4 MIR8069-1-201ENST00000616627 86 ntBASIC4.78□□□□□ -1.64
LIMD1Q9UGP4 MIR8069-2-201ENST00000621412 86 ntBASIC4.78□□□□□ -1.64
LIMD1Q9UGP4 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
LIMD1Q9UGP4 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.78□□□□□ -1.64
LIMD1Q9UGP4 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
LIMD1Q9UGP4 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
LIMD1Q9UGP4 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.77□□□□□ -1.65
LIMD1Q9UGP4 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.77□□□□□ -1.65
LIMD1Q9UGP4 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.77□□□□□ -1.65
LIMD1Q9UGP4 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
LIMD1Q9UGP4 AC100821.1-201ENST00000523153 2479 ntBASIC4.77□□□□□ -1.65
LIMD1Q9UGP4 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.77□□□□□ -1.65
LIMD1Q9UGP4 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
LIMD1Q9UGP4 RNA5SP205-201ENST00000364653 136 ntBASIC4.77□□□□□ -1.65
LIMD1Q9UGP4 RNA5SP366-201ENST00000365454 123 ntBASIC4.77□□□□□ -1.65
LIMD1Q9UGP4 Y_RNA.368-201ENST00000365547 113 ntBASIC4.77□□□□□ -1.65
LIMD1Q9UGP4 Y_RNA.456-201ENST00000384232 111 ntBASIC4.77□□□□□ -1.65
LIMD1Q9UGP4 MIR147B-201ENST00000390185 80 ntBASIC4.77□□□□□ -1.65
LIMD1Q9UGP4 SNORA26.5-201ENST00000391215 123 ntBASIC4.77□□□□□ -1.65
LIMD1Q9UGP4 AL590762.2-201ENST00000395798 571 ntBASIC4.77□□□□□ -1.65
LIMD1Q9UGP4 SCARNA10-201ENST00000459255 330 ntBASIC4.77□□□□□ -1.65
LIMD1Q9UGP4 RPL30P14-201ENST00000482744 348 ntBASIC4.77□□□□□ -1.65
LIMD1Q9UGP4 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC4.77□□□□□ -1.65
LIMD1Q9UGP4 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
LIMD1Q9UGP4 AC005868.1-201ENST00000536421 331 ntBASIC4.77□□□□□ -1.65
LIMD1Q9UGP4 AC025281.1-201ENST00000567026 265 ntBASIC4.77□□□□□ -1.65
LIMD1Q9UGP4 AC002076.2-201ENST00000617362 122 ntBASIC4.77□□□□□ -1.65
LIMD1Q9UGP4 MIR3653-201ENST00000625572 110 ntBASIC4.77□□□□□ -1.65
LIMD1Q9UGP4 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.77□□□□□ -1.65
LIMD1Q9UGP4 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.77□□□□□ -1.65
LIMD1Q9UGP4 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.77□□□□□ -1.65
LIMD1Q9UGP4 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 AL136164.3-201ENST00000624429 3978 ntBASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 ZFRP1-201ENST00000457579 2970 ntBASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 Y_RNA.273-201ENST00000364703 102 ntBASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 RNA5-8SP4-201ENST00000365096 150 ntBASIC4.76□□□□□ -1.65
LIMD1Q9UGP4 Y_RNA.337-201ENST00000365312 102 ntBASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 113.6 ms