Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 MIR4424-201ENST00000585257 86 ntBASIC1.99□□□□□ -2.09
EXOSC3Q9NQT5 APOOP1-201ENST00000604695 592 ntBASIC1.99□□□□□ -2.09
EXOSC3Q9NQT5 AL138963.2-201ENST00000605137 226 ntBASIC1.99□□□□□ -2.09
EXOSC3Q9NQT5 U4.7-201ENST00000638126 106 ntBASIC1.99□□□□□ -2.09
EXOSC3Q9NQT5 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC1.99□□□□□ -2.09
EXOSC3Q9NQT5 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.99□□□□□ -2.09
EXOSC3Q9NQT5 HAUS6P2-201ENST00000433254 2404 ntBASIC1.99□□□□□ -2.09
EXOSC3Q9NQT5 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
EXOSC3Q9NQT5 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC1.99□□□□□ -2.09
EXOSC3Q9NQT5 MTND5P6-201ENST00000422338 1798 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 RNU4-82P-201ENST00000362443 140 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 RNU6-212P-201ENST00000362642 104 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 Y_RNA.40-201ENST00000362645 93 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 RNU6-1010P-201ENST00000362757 107 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 RNU6-428P-201ENST00000362942 107 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 RNU6-623P-201ENST00000363143 105 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 SNORA38-201ENST00000363946 132 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 RNA5SP37-201ENST00000365420 130 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 RNU6-487P-201ENST00000365430 104 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 RNU4-20P-201ENST00000365601 151 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 XGY1-201ENST00000381172 446 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 Y_RNA.480-201ENST00000384364 102 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 AC007064.1-201ENST00000412238 351 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 SNORD56-201ENST00000413522 71 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 AL591043.1-201ENST00000432461 424 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 USP9YP8-201ENST00000441913 500 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 MTND1P1-201ENST00000445453 368 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 AL031274.1-201ENST00000450334 232 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 CKS1BP2-201ENST00000497342 240 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 AC008526.1-201ENST00000509149 338 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 RNU2-53P-201ENST00000516257 147 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 Y_RNA.693-201ENST00000516641 110 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 RNU6-835P-201ENST00000516974 104 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 AL118558.2-201ENST00000556294 238 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 RPL30P11-203ENST00000598995 310 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 AL713866.2-201ENST00000603579 219 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 AF250324.2-201ENST00000608299 610 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 AC015540.1-201ENST00000615828 501 ntBASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC1.98□□□□□ -2.09
EXOSC3Q9NQT5 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 RNU4-66P-201ENST00000365199 138 ntBASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 RPL17P50-201ENST00000396131 546 ntBASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 AL135786.1-201ENST00000415892 214 ntBASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 AC011753.1-201ENST00000451001 220 ntBASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 RNU6-261P-201ENST00000459506 102 ntBASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 MTCO3P38-201ENST00000468910 766 ntBASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 AC019235.1-201ENST00000503847 207 ntBASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 AF213884.2-201ENST00000510417 903 ntBASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 RNU6-377P-201ENST00000515965 102 ntBASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 RNU6-314P-201ENST00000516574 104 ntBASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 AK6P1-201ENST00000540219 478 ntBASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 AC090115.3-201ENST00000553218 849 ntBASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 PSMA3P-201ENST00000555485 635 ntBASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 AL133241.1-201ENST00000556832 487 ntBASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 AC093249.1-201ENST00000567049 203 ntBASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 MIR4448-201ENST00000584360 86 ntBASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 AC012557.2-201ENST00000605919 418 ntBASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 Z82243.1-201ENST00000609432 473 ntBASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 uc_338.15-201ENST00000615470 191 ntBASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 MIR203B-201ENST00000636080 86 ntBASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 AC099654.12-201ENST00000639868 649 ntBASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC1.97□□□□□ -2.09
EXOSC3Q9NQT5 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC1.96□□□□□ -2.09
EXOSC3Q9NQT5 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.96□□□□□ -2.09
EXOSC3Q9NQT5 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 RNU6-105P-201ENST00000363909 104 ntBASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 RNU1-91P-201ENST00000364746 163 ntBASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 U3.13-201ENST00000364804 214 ntBASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 Y_RNA.481-201ENST00000384373 102 ntBASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 MIR544A-201ENST00000384855 91 ntBASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 AC007969.2-201ENST00000441891 191 ntBASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 TPTE2P5-203ENST00000458118 728 ntBASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 RNU6-717P-201ENST00000459076 104 ntBASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 AC068781.1-201ENST00000488231 618 ntBASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC1.96□□□□□ -2.1
EXOSC3Q9NQT5 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms