Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 Y_RNA.431-201ENST00000384086 102 ntBASIC2.85□□□□□ -1.95
NPAS1Q99742 SNORD67-201ENST00000390833 111 ntBASIC2.85□□□□□ -1.95
NPAS1Q99742 RNU6-1140P-201ENST00000410517 106 ntBASIC2.85□□□□□ -1.95
NPAS1Q99742 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.85□□□□□ -1.95
NPAS1Q99742 AC104332.2-201ENST00000429959 156 ntBASIC2.85□□□□□ -1.95
NPAS1Q99742 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2.85□□□□□ -1.95
NPAS1Q99742 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC2.85□□□□□ -1.95
NPAS1Q99742 AC006445.1-201ENST00000491925 405 ntBASIC2.85□□□□□ -1.95
NPAS1Q99742 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC2.85□□□□□ -1.95
NPAS1Q99742 AC026782.1-201ENST00000512952 449 ntBASIC2.85□□□□□ -1.95
NPAS1Q99742 SCARNA17.1-201ENST00000516211 143 ntBASIC2.85□□□□□ -1.95
NPAS1Q99742 Y_RNA.670-201ENST00000516255 105 ntBASIC2.85□□□□□ -1.95
NPAS1Q99742 SCARNA17.2-201ENST00000516334 143 ntBASIC2.85□□□□□ -1.95
NPAS1Q99742 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC2.85□□□□□ -1.95
NPAS1Q99742 HSPE1P4-201ENST00000550617 308 ntBASIC2.85□□□□□ -1.95
NPAS1Q99742 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.85□□□□□ -1.95
NPAS1Q99742 MTCO3P13-201ENST00000577757 781 ntBASIC2.85□□□□□ -1.95
NPAS1Q99742 CPDP1-201ENST00000579660 283 ntBASIC2.85□□□□□ -1.95
NPAS1Q99742 RPS15AP11-201ENST00000594193 385 ntBASIC2.85□□□□□ -1.95
NPAS1Q99742 RPL23AP78-201ENST00000599928 470 ntBASIC2.85□□□□□ -1.95
NPAS1Q99742 AL161756.2-201ENST00000604597 246 ntBASIC2.85□□□□□ -1.95
NPAS1Q99742 AP000654.2-201ENST00000605633 586 ntBASIC2.85□□□□□ -1.95
NPAS1Q99742 RNU6-91P-201ENST00000607774 107 ntBASIC2.85□□□□□ -1.95
NPAS1Q99742 SCARNA17.4-201ENST00000614296 143 ntBASIC2.85□□□□□ -1.95
NPAS1Q99742 AL669831.3-213ENST00000636676 183 ntBASIC2.85□□□□□ -1.95
NPAS1Q99742 KPNA2P1-201ENST00000458289 1591 ntBASIC2.85□□□□□ -1.95
NPAS1Q99742 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
NPAS1Q99742 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.85□□□□□ -1.95
NPAS1Q99742 AC099654.7-201ENST00000635788 2127 ntBASIC2.84□□□□□ -1.95
NPAS1Q99742 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC2.84□□□□□ -1.95
NPAS1Q99742 U3.6-201ENST00000363622 211 ntBASIC2.84□□□□□ -1.95
NPAS1Q99742 RNU6-487P-201ENST00000365430 104 ntBASIC2.84□□□□□ -1.95
NPAS1Q99742 RNU6-1083P-201ENST00000384022 107 ntBASIC2.84□□□□□ -1.95
NPAS1Q99742 Y_RNA.460-201ENST00000384255 102 ntBASIC2.84□□□□□ -1.95
NPAS1Q99742 SNORA54-201ENST00000384281 123 ntBASIC2.84□□□□□ -1.95
NPAS1Q99742 Y_RNA.509-201ENST00000384506 99 ntBASIC2.84□□□□□ -1.95
NPAS1Q99742 U3.26-201ENST00000391236 204 ntBASIC2.84□□□□□ -1.95
NPAS1Q99742 AL133396.1-201ENST00000432048 687 ntBASIC2.84□□□□□ -1.95
NPAS1Q99742 AC007969.2-201ENST00000441891 191 ntBASIC2.84□□□□□ -1.95
NPAS1Q99742 SNORD5.1-201ENST00000458800 75 ntBASIC2.84□□□□□ -1.95
NPAS1Q99742 SNORD19B-201ENST00000459623 84 ntBASIC2.84□□□□□ -1.95
NPAS1Q99742 RN7SL807P-201ENST00000470923 297 ntBASIC2.84□□□□□ -1.95
NPAS1Q99742 AC109925.1-201ENST00000478069 331 ntBASIC2.84□□□□□ -1.95
NPAS1Q99742 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.84□□□□□ -1.95
NPAS1Q99742 PTP4A1P4-201ENST00000512479 322 ntBASIC2.84□□□□□ -1.95
NPAS1Q99742 RN7SKP57-201ENST00000517248 293 ntBASIC2.84□□□□□ -1.95
NPAS1Q99742 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.84□□□□□ -1.95
NPAS1Q99742 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC2.84□□□□□ -1.95
NPAS1Q99742 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.84□□□□□ -1.95
NPAS1Q99742 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.84□□□□□ -1.95
NPAS1Q99742 MIR5004-201ENST00000579078 107 ntBASIC2.84□□□□□ -1.95
NPAS1Q99742 AC090897.2-201ENST00000581715 130 ntBASIC2.84□□□□□ -1.95
NPAS1Q99742 AC012493.2-201ENST00000595083 291 ntBASIC2.84□□□□□ -1.95
NPAS1Q99742 DLEU1_1.1-201ENST00000618107 190 ntBASIC2.84□□□□□ -1.95
NPAS1Q99742 MIR7515-201ENST00000637837 67 ntBASIC2.84□□□□□ -1.95
NPAS1Q99742 AL353743.1-202ENST00000431724 1695 ntBASIC2.84□□□□□ -1.95
NPAS1Q99742 ZNF736P3Y-201ENST00000428264 1465 ntBASIC2.84□□□□□ -1.96
NPAS1Q99742 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.83□□□□□ -1.96
NPAS1Q99742 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
NPAS1Q99742 RNU6-1188P-201ENST00000363795 107 ntBASIC2.83□□□□□ -1.96
NPAS1Q99742 U8.8-201ENST00000365399 135 ntBASIC2.83□□□□□ -1.96
NPAS1Q99742 Y_RNA.419-201ENST00000384041 102 ntBASIC2.83□□□□□ -1.96
NPAS1Q99742 SNORA7.4-201ENST00000384249 137 ntBASIC2.83□□□□□ -1.96
NPAS1Q99742 Y_RNA.504-201ENST00000384481 104 ntBASIC2.83□□□□□ -1.96
NPAS1Q99742 Y_RNA.535-201ENST00000384612 99 ntBASIC2.83□□□□□ -1.96
NPAS1Q99742 RNU6-1222P-201ENST00000384615 107 ntBASIC2.83□□□□□ -1.96
NPAS1Q99742 RNU6-331P-201ENST00000384724 107 ntBASIC2.83□□□□□ -1.96
NPAS1Q99742 RNY4P36-201ENST00000391116 96 ntBASIC2.83□□□□□ -1.96
NPAS1Q99742 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.83□□□□□ -1.96
NPAS1Q99742 RNU6ATAC10P-201ENST00000408635 111 ntBASIC2.83□□□□□ -1.96
NPAS1Q99742 AP000275.1-201ENST00000411943 390 ntBASIC2.83□□□□□ -1.96
NPAS1Q99742 ATG3P1-201ENST00000419507 911 ntBASIC2.83□□□□□ -1.96
NPAS1Q99742 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.83□□□□□ -1.96
NPAS1Q99742 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC2.83□□□□□ -1.96
NPAS1Q99742 FO393415.2-201ENST00000480085 343 ntBASIC2.83□□□□□ -1.96
NPAS1Q99742 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.83□□□□□ -1.96
NPAS1Q99742 AP001025.1-201ENST00000486139 332 ntBASIC2.83□□□□□ -1.96
NPAS1Q99742 HMGN1P13-201ENST00000505795 138 ntBASIC2.83□□□□□ -1.96
NPAS1Q99742 SEM1P1-201ENST00000506694 209 ntBASIC2.83□□□□□ -1.96
NPAS1Q99742 RNU6-307P-201ENST00000516743 106 ntBASIC2.83□□□□□ -1.96
NPAS1Q99742 Y_RNA.718-201ENST00000517110 102 ntBASIC2.83□□□□□ -1.96
NPAS1Q99742 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.83□□□□□ -1.96
NPAS1Q99742 CKS1BP7-201ENST00000522230 235 ntBASIC2.83□□□□□ -1.96
NPAS1Q99742 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.83□□□□□ -1.96
NPAS1Q99742 HPRT1P3-201ENST00000539521 576 ntBASIC2.83□□□□□ -1.96
NPAS1Q99742 GLYCAM1-201ENST00000546596 285 ntBASIC2.83□□□□□ -1.96
NPAS1Q99742 MIR3200-201ENST00000580767 85 ntBASIC2.83□□□□□ -1.96
NPAS1Q99742 AC011494.1-201ENST00000596454 237 ntBASIC2.83□□□□□ -1.96
NPAS1Q99742 MIR8057-201ENST00000620957 69 ntBASIC2.83□□□□□ -1.96
NPAS1Q99742 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.83□□□□□ -1.96
NPAS1Q99742 AC073476.4-201ENST00000628409 72 ntBASIC2.83□□□□□ -1.96
NPAS1Q99742 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
NPAS1Q99742 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
NPAS1Q99742 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
NPAS1Q99742 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
NPAS1Q99742 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.83□□□□□ -1.96
NPAS1Q99742 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.83□□□□□ -1.96
NPAS1Q99742 AL359854.1-201ENST00000614203 1594 ntBASIC2.83□□□□□ -1.96
NPAS1Q99742 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.82□□□□□ -1.96
NPAS1Q99742 AC006026.1-201ENST00000444025 1803 ntBASIC2.82□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms