Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 Y_RNA.622-201ENST00000411091 108 ntBASIC4.08□□□□□ -1.76
COL8A1P27658 AC007738.1-201ENST00000413892 348 ntBASIC4.08□□□□□ -1.76
COL8A1P27658 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COL8A1P27658 AC104333.2-201ENST00000422630 192 ntBASIC4.08□□□□□ -1.76
COL8A1P27658 YME1L1P1-201ENST00000429435 297 ntBASIC4.08□□□□□ -1.76
COL8A1P27658 AC009238.2-201ENST00000431026 355 ntBASIC4.08□□□□□ -1.76
COL8A1P27658 HMGB1P37-201ENST00000439613 609 ntBASIC4.08□□□□□ -1.76
COL8A1P27658 SNRPGP8-201ENST00000454064 226 ntBASIC4.08□□□□□ -1.76
COL8A1P27658 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC4.08□□□□□ -1.76
COL8A1P27658 RN7SKP43-201ENST00000516173 320 ntBASIC4.08□□□□□ -1.76
COL8A1P27658 AC022790.1-201ENST00000522872 204 ntBASIC4.08□□□□□ -1.76
COL8A1P27658 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COL8A1P27658 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.08□□□□□ -1.76
COL8A1P27658 MIR3936-201ENST00000584304 110 ntBASIC4.08□□□□□ -1.76
COL8A1P27658 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC4.08□□□□□ -1.76
COL8A1P27658 AL359198.2-201ENST00000611836 194 ntBASIC4.08□□□□□ -1.76
COL8A1P27658 MIR3653-201ENST00000625572 110 ntBASIC4.08□□□□□ -1.76
COL8A1P27658 MIR492-201ENST00000638676 116 ntBASIC4.08□□□□□ -1.76
COL8A1P27658 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
COL8A1P27658 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL8A1P27658 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.08□□□□□ -1.76
COL8A1P27658 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
COL8A1P27658 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.08□□□□□ -1.76
COL8A1P27658 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL8A1P27658 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL8A1P27658 SALL4P2-201ENST00000423288 2910 ntBASIC4.07□□□□□ -1.76
COL8A1P27658 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL8A1P27658 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.07□□□□□ -1.76
COL8A1P27658 RNU6-978P-201ENST00000364371 103 ntBASIC4.07□□□□□ -1.76
COL8A1P27658 Y_RNA.243-201ENST00000364481 109 ntBASIC4.07□□□□□ -1.76
COL8A1P27658 RNU6-1113P-201ENST00000384348 107 ntBASIC4.07□□□□□ -1.76
COL8A1P27658 MIR544A-201ENST00000384855 91 ntBASIC4.07□□□□□ -1.76
COL8A1P27658 MIR518D-201ENST00000385014 87 ntBASIC4.07□□□□□ -1.76
COL8A1P27658 SNORA68.2-201ENST00000391263 128 ntBASIC4.07□□□□□ -1.76
COL8A1P27658 RN7SKP267-201ENST00000410381 285 ntBASIC4.07□□□□□ -1.76
COL8A1P27658 RNU6-383P-201ENST00000410864 94 ntBASIC4.07□□□□□ -1.76
COL8A1P27658 COX6CP13-201ENST00000428703 226 ntBASIC4.07□□□□□ -1.76
COL8A1P27658 AL117339.2-201ENST00000430475 180 ntBASIC4.07□□□□□ -1.76
COL8A1P27658 AC011998.1-201ENST00000433403 117 ntBASIC4.07□□□□□ -1.76
COL8A1P27658 RPL23AP93-201ENST00000440847 484 ntBASIC4.07□□□□□ -1.76
COL8A1P27658 RPL39P40-201ENST00000445481 146 ntBASIC4.07□□□□□ -1.76
COL8A1P27658 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC4.07□□□□□ -1.76
COL8A1P27658 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC4.07□□□□□ -1.76
COL8A1P27658 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC4.07□□□□□ -1.76
COL8A1P27658 RPL23AP14-201ENST00000468281 468 ntBASIC4.07□□□□□ -1.76
COL8A1P27658 RN7SL810P-201ENST00000493031 276 ntBASIC4.07□□□□□ -1.76
COL8A1P27658 RNU1-6P-201ENST00000516290 144 ntBASIC4.07□□□□□ -1.76
COL8A1P27658 RNA5SP291-201ENST00000517222 105 ntBASIC4.07□□□□□ -1.76
COL8A1P27658 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.07□□□□□ -1.76
COL8A1P27658 LINC00933-203ENST00000559812 219 ntBASIC4.07□□□□□ -1.76
COL8A1P27658 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.07□□□□□ -1.76
COL8A1P27658 U3.53-201ENST00000628922 216 ntBASIC4.07□□□□□ -1.76
COL8A1P27658 AC000123.3-201ENST00000624029 4975 ntBASIC4.07□□□□□ -1.76
COL8A1P27658 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL8A1P27658 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
COL8A1P27658 AL133383.2-201ENST00000622958 2336 ntBASIC4.07□□□□□ -1.76
COL8A1P27658 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.07□□□□□ -1.76
COL8A1P27658 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.07□□□□□ -1.76
COL8A1P27658 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.07□□□□□ -1.76
COL8A1P27658 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL8A1P27658 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
COL8A1P27658 ZNF137P-201ENST00000456718 1920 ntBASIC4.07□□□□□ -1.76
COL8A1P27658 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
COL8A1P27658 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
COL8A1P27658 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
COL8A1P27658 AC139713.2-215ENST00000641428 5037 ntBASIC4.06□□□□□ -1.76
COL8A1P27658 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
COL8A1P27658 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.06□□□□□ -1.76
COL8A1P27658 AC063976.2-201ENST00000425667 3556 ntBASIC4.06□□□□□ -1.76
COL8A1P27658 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.06□□□□□ -1.76
COL8A1P27658 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL8A1P27658 AC021146.4-201ENST00000309229 279 ntBASIC4.06□□□□□ -1.76
COL8A1P27658 SNORA70E-201ENST00000384492 135 ntBASIC4.06□□□□□ -1.76
COL8A1P27658 SNORD12C-201ENST00000386307 89 ntBASIC4.06□□□□□ -1.76
COL8A1P27658 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
COL8A1P27658 NDUFS5P4-201ENST00000412983 318 ntBASIC4.06□□□□□ -1.76
COL8A1P27658 AC244670.1-201ENST00000436879 112 ntBASIC4.06□□□□□ -1.76
COL8A1P27658 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.06□□□□□ -1.76
COL8A1P27658 AL451050.1-201ENST00000450126 415 ntBASIC4.06□□□□□ -1.76
COL8A1P27658 SCARNA10-201ENST00000459255 330 ntBASIC4.06□□□□□ -1.76
COL8A1P27658 RNU6-107P-201ENST00000516643 102 ntBASIC4.06□□□□□ -1.76
COL8A1P27658 RNU6-197P-201ENST00000516680 100 ntBASIC4.06□□□□□ -1.76
COL8A1P27658 AC025647.1-201ENST00000517879 253 ntBASIC4.06□□□□□ -1.76
COL8A1P27658 AC093249.4-201ENST00000564755 259 ntBASIC4.06□□□□□ -1.76
COL8A1P27658 AC025946.2-201ENST00000603398 234 ntBASIC4.06□□□□□ -1.76
COL8A1P27658 MIR6875-201ENST00000617506 72 ntBASIC4.06□□□□□ -1.76
COL8A1P27658 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.06□□□□□ -1.76
COL8A1P27658 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.06□□□□□ -1.76
COL8A1P27658 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
COL8A1P27658 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL8A1P27658 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
COL8A1P27658 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL8A1P27658 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL8A1P27658 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL8A1P27658 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
COL8A1P27658 SNORA63.1-201ENST00000362493 131 ntBASIC4.05□□□□□ -1.76
COL8A1P27658 RNA5SP366-201ENST00000365454 123 ntBASIC4.05□□□□□ -1.76
COL8A1P27658 Z98749.2-208ENST00000381646 500 ntBASIC4.05□□□□□ -1.76
COL8A1P27658 MIR200C-201ENST00000384980 68 ntBASIC4.05□□□□□ -1.76
COL8A1P27658 RNU6-440P-201ENST00000390882 105 ntBASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms