Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
LIMD1Q9UGP4 MIR569-201ENST00000385228 96 ntBASIC4.83□□□□□ -1.64
LIMD1Q9UGP4 SNORA40-201ENST00000388090 126 ntBASIC4.83□□□□□ -1.64
LIMD1Q9UGP4 RPL36AP10-201ENST00000421785 322 ntBASIC4.83□□□□□ -1.64
LIMD1Q9UGP4 AC074290.1-201ENST00000448883 135 ntBASIC4.83□□□□□ -1.64
LIMD1Q9UGP4 U8.19-201ENST00000459095 133 ntBASIC4.83□□□□□ -1.64
LIMD1Q9UGP4 RPL32P34-201ENST00000486380 400 ntBASIC4.83□□□□□ -1.64
LIMD1Q9UGP4 SRI-210ENST00000490437 570 ntTSL 2 BASIC4.83□□□□□ -1.64
LIMD1Q9UGP4 AC073073.1-201ENST00000493920 463 ntBASIC4.83□□□□□ -1.64
LIMD1Q9UGP4 AC091152.3-201ENST00000604227 325 ntBASIC4.83□□□□□ -1.64
LIMD1Q9UGP4 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC4.83□□□□□ -1.64
LIMD1Q9UGP4 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
LIMD1Q9UGP4 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
LIMD1Q9UGP4 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
LIMD1Q9UGP4 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
LIMD1Q9UGP4 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 AC010329.5-201ENST00000623497 2174 ntBASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 AC021146.4-201ENST00000309229 279 ntBASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 U3.9-201ENST00000363823 204 ntBASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 RNU6-801P-201ENST00000364087 105 ntBASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 RNU6-454P-201ENST00000364292 107 ntBASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 RNU6-578P-201ENST00000390980 103 ntBASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 Z98745.1-201ENST00000402553 494 ntBASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 RNU6-257P-201ENST00000410238 98 ntBASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 AL365496.1-201ENST00000426885 215 ntBASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 NDUFS5P3-201ENST00000450668 321 ntBASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 RN7SL810P-201ENST00000493031 276 ntBASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 RPL36AP41-201ENST00000493820 306 ntBASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 RNA5SP249-201ENST00000516127 99 ntBASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 AC021269.2-201ENST00000532318 330 ntBASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 AC105129.1-201ENST00000560250 297 ntBASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 AL365222.1-201ENST00000614661 98 ntBASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 AC107068.1-201ENST00000563286 4218 ntBASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 AC010332.2-201ENST00000613083 1904 ntBASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
LIMD1Q9UGP4 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
LIMD1Q9UGP4 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
LIMD1Q9UGP4 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
LIMD1Q9UGP4 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
LIMD1Q9UGP4 SNORD114-19-201ENST00000363072 75 ntBASIC4.81□□□□□ -1.64
LIMD1Q9UGP4 MIR659-201ENST00000384963 97 ntBASIC4.81□□□□□ -1.64
LIMD1Q9UGP4 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
LIMD1Q9UGP4 AL031003.1-201ENST00000404229 172 ntBASIC4.81□□□□□ -1.64
LIMD1Q9UGP4 RN7SKP177-201ENST00000410567 355 ntBASIC4.81□□□□□ -1.64
LIMD1Q9UGP4 RPL30P13-201ENST00000418873 348 ntBASIC4.81□□□□□ -1.64
LIMD1Q9UGP4 AC011998.1-201ENST00000433403 117 ntBASIC4.81□□□□□ -1.64
LIMD1Q9UGP4 Z75741.1-201ENST00000446793 314 ntBASIC4.81□□□□□ -1.64
LIMD1Q9UGP4 AC091179.1-201ENST00000461606 579 ntBASIC4.81□□□□□ -1.64
LIMD1Q9UGP4 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.81□□□□□ -1.64
LIMD1Q9UGP4 AC012493.2-201ENST00000595083 291 ntBASIC4.81□□□□□ -1.64
LIMD1Q9UGP4 AC018692.3-201ENST00000623929 123 ntBASIC4.81□□□□□ -1.64
LIMD1Q9UGP4 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LIMD1Q9UGP4 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
LIMD1Q9UGP4 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
LIMD1Q9UGP4 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
LIMD1Q9UGP4 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
LIMD1Q9UGP4 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 PCAT14-202ENST00000627127 3935 ntBASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 RNU6-899P-201ENST00000363947 107 ntBASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 SNORD115-30-201ENST00000364117 82 ntBASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 UBBP2-201ENST00000376781 231 ntBASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 MIR513C-201ENST00000401352 84 ntBASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 AL355497.1-201ENST00000406262 551 ntBASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 MIR1271-201ENST00000408537 86 ntBASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 AL714022.1-201ENST00000439897 151 ntBASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 PHBP16-201ENST00000446318 950 ntBASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 snoU13.28-201ENST00000459235 104 ntBASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 RN7SL517P-201ENST00000462240 305 ntBASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 PARP4P3-201ENST00000510265 317 ntBASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 RN7SL176P-201ENST00000580352 264 ntBASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 MIR5688-201ENST00000580619 83 ntBASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 DNAJC19P2-201ENST00000593340 302 ntBASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 AC069294.1-201ENST00000608397 350 ntBASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 AC091953.5-201ENST00000622919 233 ntBASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
LIMD1Q9UGP4 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.79□□□□□ -1.64
LIMD1Q9UGP4 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 119.1 ms