Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 NDUFB4P8-201ENST00000435351 367 ntBASIC4.55□□□□□ -1.68
FOXC1Q12948 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.55□□□□□ -1.68
FOXC1Q12948 Z75741.1-201ENST00000446793 314 ntBASIC4.55□□□□□ -1.68
FOXC1Q12948 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC4.55□□□□□ -1.68
FOXC1Q12948 AC010531.2-201ENST00000465012 153 ntBASIC4.55□□□□□ -1.68
FOXC1Q12948 COX6CP6-201ENST00000490840 228 ntBASIC4.55□□□□□ -1.68
FOXC1Q12948 RNU1-6P-201ENST00000516290 144 ntBASIC4.55□□□□□ -1.68
FOXC1Q12948 SNORA70.16-201ENST00000516390 95 ntBASIC4.55□□□□□ -1.68
FOXC1Q12948 AL161713.1-201ENST00000555538 145 ntBASIC4.55□□□□□ -1.68
FOXC1Q12948 AC009163.5-201ENST00000575421 637 ntBASIC4.55□□□□□ -1.68
FOXC1Q12948 MIR3136-201ENST00000583498 78 ntBASIC4.55□□□□□ -1.68
FOXC1Q12948 FTX_3.1-201ENST00000610451 147 ntBASIC4.55□□□□□ -1.68
FOXC1Q12948 AL022401.1-201ENST00000619498 108 ntBASIC4.55□□□□□ -1.68
FOXC1Q12948 AL023881.1-201ENST00000621088 301 ntBASIC4.55□□□□□ -1.68
FOXC1Q12948 SNORD98-201ENST00000636377 67 ntBASIC4.55□□□□□ -1.68
FOXC1Q12948 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC4.55□□□□□ -1.68
FOXC1Q12948 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.55□□□□□ -1.68
FOXC1Q12948 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC4.55□□□□□ -1.68
FOXC1Q12948 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
FOXC1Q12948 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC4.55□□□□□ -1.68
FOXC1Q12948 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.55□□□□□ -1.68
FOXC1Q12948 RALGAPA1P1-201ENST00000443361 6232 ntBASIC4.55□□□□□ -1.68
FOXC1Q12948 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC4.54□□□□□ -1.68
FOXC1Q12948 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
FOXC1Q12948 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
FOXC1Q12948 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
FOXC1Q12948 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.54□□□□□ -1.68
FOXC1Q12948 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
FOXC1Q12948 AP000542.2-201ENST00000623199 6179 ntBASIC4.54□□□□□ -1.68
FOXC1Q12948 SNORA73.1-201ENST00000363107 205 ntBASIC4.54□□□□□ -1.68
FOXC1Q12948 RNU6-1296P-201ENST00000383879 107 ntBASIC4.54□□□□□ -1.68
FOXC1Q12948 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.54□□□□□ -1.68
FOXC1Q12948 PTMAP2-201ENST00000397627 327 ntBASIC4.54□□□□□ -1.68
FOXC1Q12948 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.54□□□□□ -1.68
FOXC1Q12948 RNU6-437P-201ENST00000459408 95 ntBASIC4.54□□□□□ -1.68
FOXC1Q12948 SNORA31.20-201ENST00000517111 133 ntBASIC4.54□□□□□ -1.68
FOXC1Q12948 RNU6-365P-201ENST00000517113 106 ntBASIC4.54□□□□□ -1.68
FOXC1Q12948 AL162713.1-201ENST00000604480 262 ntBASIC4.54□□□□□ -1.68
FOXC1Q12948 AC012468.1-201ENST00000604888 430 ntBASIC4.54□□□□□ -1.68
FOXC1Q12948 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC4.54□□□□□ -1.68
FOXC1Q12948 AC005005.4-201ENST00000623789 16698 ntBASIC4.54□□□□□ -1.68
FOXC1Q12948 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.54□□□□□ -1.68
FOXC1Q12948 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC4.54□□□□□ -1.68
FOXC1Q12948 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC4.54□□□□□ -1.68
FOXC1Q12948 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
FOXC1Q12948 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.54□□□□□ -1.68
FOXC1Q12948 AC125336.1-201ENST00000508893 2827 ntBASIC4.54□□□□□ -1.68
FOXC1Q12948 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
FOXC1Q12948 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC4.53□□□□□ -1.68
FOXC1Q12948 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
FOXC1Q12948 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
FOXC1Q12948 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC4.53□□□□□ -1.68
FOXC1Q12948 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
FOXC1Q12948 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC4.53□□□□□ -1.68
FOXC1Q12948 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
FOXC1Q12948 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
FOXC1Q12948 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
FOXC1Q12948 ZNF137P-201ENST00000456718 1920 ntBASIC4.53□□□□□ -1.68
FOXC1Q12948 AL136360.1-201ENST00000503377 1900 ntBASIC4.53□□□□□ -1.68
FOXC1Q12948 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.53□□□□□ -1.68
FOXC1Q12948 Y_RNA.78-201ENST00000362970 110 ntBASIC4.53□□□□□ -1.68
FOXC1Q12948 Y_RNA.91-201ENST00000363042 107 ntBASIC4.53□□□□□ -1.68
FOXC1Q12948 Y_RNA.634-201ENST00000364811 113 ntBASIC4.53□□□□□ -1.68
FOXC1Q12948 RNA5-8SP4-201ENST00000365096 150 ntBASIC4.53□□□□□ -1.68
FOXC1Q12948 RNU6-487P-201ENST00000365430 104 ntBASIC4.53□□□□□ -1.68
FOXC1Q12948 Y_RNA.593-201ENST00000410292 98 ntBASIC4.53□□□□□ -1.68
FOXC1Q12948 COX6CP13-201ENST00000428703 226 ntBASIC4.53□□□□□ -1.68
FOXC1Q12948 AC009238.2-201ENST00000431026 355 ntBASIC4.53□□□□□ -1.68
FOXC1Q12948 snoU13.24-201ENST00000458998 104 ntBASIC4.53□□□□□ -1.68
FOXC1Q12948 RPL35AP15-201ENST00000468042 339 ntBASIC4.53□□□□□ -1.68
FOXC1Q12948 AC078817.1-201ENST00000492623 435 ntBASIC4.53□□□□□ -1.68
FOXC1Q12948 RNA5SP236-201ENST00000516169 116 ntBASIC4.53□□□□□ -1.68
FOXC1Q12948 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.53□□□□□ -1.68
FOXC1Q12948 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
FOXC1Q12948 POLR3GP1-201ENST00000594073 261 ntBASIC4.53□□□□□ -1.68
FOXC1Q12948 TCL6_2.1-201ENST00000615162 119 ntBASIC4.53□□□□□ -1.68
FOXC1Q12948 SMG1P6-201ENST00000532337 2930 ntBASIC4.53□□□□□ -1.68
FOXC1Q12948 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
FOXC1Q12948 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
FOXC1Q12948 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC4.53□□□□□ -1.68
FOXC1Q12948 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
FOXC1Q12948 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.52□□□□□ -1.69
FOXC1Q12948 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.52□□□□□ -1.69
FOXC1Q12948 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
FOXC1Q12948 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
FOXC1Q12948 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
FOXC1Q12948 SNORA63.5-201ENST00000363548 123 ntBASIC4.52□□□□□ -1.69
FOXC1Q12948 U3.8-201ENST00000363675 217 ntBASIC4.52□□□□□ -1.69
FOXC1Q12948 Y_RNA.342-201ENST00000365352 113 ntBASIC4.52□□□□□ -1.69
FOXC1Q12948 GNG5P2-201ENST00000372054 207 ntBASIC4.52□□□□□ -1.69
FOXC1Q12948 MIR518C-201ENST00000384822 101 ntBASIC4.52□□□□□ -1.69
FOXC1Q12948 AL590004.2-201ENST00000404787 371 ntBASIC4.52□□□□□ -1.69
FOXC1Q12948 SNORA19.1-201ENST00000410656 129 ntBASIC4.52□□□□□ -1.69
FOXC1Q12948 AC002075.2-201ENST00000425207 252 ntBASIC4.52□□□□□ -1.69
FOXC1Q12948 AL365496.1-201ENST00000426885 215 ntBASIC4.52□□□□□ -1.69
FOXC1Q12948 MTATP6P21-201ENST00000440681 189 ntBASIC4.52□□□□□ -1.69
FOXC1Q12948 RPL36AP21-201ENST00000490372 323 ntBASIC4.52□□□□□ -1.69
FOXC1Q12948 RN7SL810P-201ENST00000493031 276 ntBASIC4.52□□□□□ -1.69
FOXC1Q12948 AC108022.1-201ENST00000493466 478 ntBASIC4.52□□□□□ -1.69
FOXC1Q12948 AC073073.1-201ENST00000493920 463 ntBASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 117.8 ms