Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.13□□□□□ -2.07
SDC3O75056 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.12□□□□□ -2.07
SDC3O75056 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
SDC3O75056 RNU6-1010P-201ENST00000362757 107 ntBASIC2.12□□□□□ -2.07
SDC3O75056 SNORD114-19-201ENST00000363072 75 ntBASIC2.12□□□□□ -2.07
SDC3O75056 RNU1-148P-201ENST00000384472 162 ntBASIC2.12□□□□□ -2.07
SDC3O75056 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.12□□□□□ -2.07
SDC3O75056 SNORD23.1-201ENST00000408212 104 ntBASIC2.12□□□□□ -2.07
SDC3O75056 RNU2-9P-201ENST00000410194 145 ntBASIC2.12□□□□□ -2.07
SDC3O75056 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC2.12□□□□□ -2.07
SDC3O75056 MTND1P23-201ENST00000416931 372 ntBASIC2.12□□□□□ -2.07
SDC3O75056 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC2.12□□□□□ -2.07
SDC3O75056 PGBD4P6-201ENST00000421501 610 ntBASIC2.12□□□□□ -2.07
SDC3O75056 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.12□□□□□ -2.07
SDC3O75056 MTCO2P19-201ENST00000427513 598 ntBASIC2.12□□□□□ -2.07
SDC3O75056 AC073464.1-201ENST00000429823 534 ntBASIC2.12□□□□□ -2.07
SDC3O75056 AL161788.1-201ENST00000441805 169 ntBASIC2.12□□□□□ -2.07
SDC3O75056 MTND2P22-201ENST00000444325 1033 ntBASIC2.12□□□□□ -2.07
SDC3O75056 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.12□□□□□ -2.07
SDC3O75056 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC2.12□□□□□ -2.07
SDC3O75056 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.12□□□□□ -2.07
SDC3O75056 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.12□□□□□ -2.07
SDC3O75056 AC006512.1-201ENST00000468816 291 ntBASIC2.12□□□□□ -2.07
SDC3O75056 RPS3AP17-201ENST00000472594 777 ntBASIC2.12□□□□□ -2.07
SDC3O75056 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC2.12□□□□□ -2.07
SDC3O75056 RPL38P4-201ENST00000502376 214 ntBASIC2.12□□□□□ -2.07
SDC3O75056 AC093534.1-201ENST00000504977 132 ntBASIC2.12□□□□□ -2.07
SDC3O75056 AC117522.2-201ENST00000510049 657 ntBASIC2.12□□□□□ -2.07
SDC3O75056 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.12□□□□□ -2.07
SDC3O75056 SNORA43.2-201ENST00000516652 128 ntBASIC2.12□□□□□ -2.07
SDC3O75056 RNU7-193P-201ENST00000516723 65 ntBASIC2.12□□□□□ -2.07
SDC3O75056 RN7SKP219-201ENST00000516825 296 ntBASIC2.12□□□□□ -2.07
SDC3O75056 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.12□□□□□ -2.07
SDC3O75056 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.12□□□□□ -2.07
SDC3O75056 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC2.12□□□□□ -2.07
SDC3O75056 PSMA3P-201ENST00000555485 635 ntBASIC2.12□□□□□ -2.07
SDC3O75056 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.12□□□□□ -2.07
SDC3O75056 AGGF1P4-201ENST00000568249 801 ntBASIC2.12□□□□□ -2.07
SDC3O75056 MIR3126-201ENST00000577443 74 ntBASIC2.12□□□□□ -2.07
SDC3O75056 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC2.12□□□□□ -2.07
SDC3O75056 BNIP3P30-201ENST00000601184 574 ntBASIC2.12□□□□□ -2.07
SDC3O75056 AL391646.1-201ENST00000603860 190 ntBASIC2.12□□□□□ -2.07
SDC3O75056 AC021646.1-201ENST00000605469 484 ntBASIC2.12□□□□□ -2.07
SDC3O75056 AL121917.1-203ENST00000605534 577 ntBASIC2.12□□□□□ -2.07
SDC3O75056 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.12□□□□□ -2.07
SDC3O75056 AC009090.3-201ENST00000616553 565 ntBASIC2.12□□□□□ -2.07
SDC3O75056 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.12□□□□□ -2.07
SDC3O75056 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.12□□□□□ -2.07
SDC3O75056 MIR219B-201ENST00000637023 88 ntBASIC2.12□□□□□ -2.07
SDC3O75056 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.12□□□□□ -2.07
SDC3O75056 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.12□□□□□ -2.07
SDC3O75056 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.12□□□□□ -2.07
SDC3O75056 RBBP8P1-201ENST00000449447 1844 ntBASIC2.12□□□□□ -2.07
SDC3O75056 AL596028.1-201ENST00000326971 197 ntBASIC2.11□□□□□ -2.07
SDC3O75056 RNU1-72P-201ENST00000362976 153 ntBASIC2.11□□□□□ -2.07
SDC3O75056 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.11□□□□□ -2.07
SDC3O75056 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
SDC3O75056 AC009238.1-201ENST00000442165 424 ntBASIC2.11□□□□□ -2.07
SDC3O75056 AC009237.6-201ENST00000446969 424 ntBASIC2.11□□□□□ -2.07
SDC3O75056 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.11□□□□□ -2.07
SDC3O75056 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.11□□□□□ -2.07
SDC3O75056 MTCO3P9-201ENST00000506989 781 ntBASIC2.11□□□□□ -2.07
SDC3O75056 SCARNA16.3-201ENST00000516595 184 ntBASIC2.11□□□□□ -2.07
SDC3O75056 RNU6-1178P-201ENST00000516674 107 ntBASIC2.11□□□□□ -2.07
SDC3O75056 HSPE1P18-201ENST00000517602 280 ntBASIC2.11□□□□□ -2.07
SDC3O75056 AC109329.1-201ENST00000518744 317 ntBASIC2.11□□□□□ -2.07
SDC3O75056 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC2.11□□□□□ -2.07
SDC3O75056 CYCSP26-201ENST00000534107 320 ntBASIC2.11□□□□□ -2.07
SDC3O75056 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC2.11□□□□□ -2.07
SDC3O75056 MTCO3P23-201ENST00000561363 289 ntBASIC2.11□□□□□ -2.07
SDC3O75056 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.11□□□□□ -2.07
SDC3O75056 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.11□□□□□ -2.07
SDC3O75056 AC009318.2-201ENST00000610917 651 ntBASIC2.11□□□□□ -2.07
SDC3O75056 SRP54-214ENST00000630962 162 ntTSL 5 BASIC2.11□□□□□ -2.07
SDC3O75056 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.11□□□□□ -2.07
SDC3O75056 ZNF720P1-201ENST00000562403 1939 ntBASIC2.11□□□□□ -2.07
SDC3O75056 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
SDC3O75056 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.1□□□□□ -2.07
SDC3O75056 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
SDC3O75056 MIRLET7G-201ENST00000362280 84 ntBASIC2.1□□□□□ -2.07
SDC3O75056 Y_RNA.296-201ENST00000364930 108 ntBASIC2.1□□□□□ -2.07
SDC3O75056 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC2.1□□□□□ -2.07
SDC3O75056 RNU6-622P-201ENST00000384272 103 ntBASIC2.1□□□□□ -2.07
SDC3O75056 RNU6-1127P-201ENST00000384580 107 ntBASIC2.1□□□□□ -2.07
SDC3O75056 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.1□□□□□ -2.07
SDC3O75056 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.1□□□□□ -2.07
SDC3O75056 WARS2P1-201ENST00000429678 537 ntBASIC2.1□□□□□ -2.07
SDC3O75056 AL365400.1-201ENST00000431854 640 ntBASIC2.1□□□□□ -2.07
SDC3O75056 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.1□□□□□ -2.07
SDC3O75056 AC016691.1-201ENST00000441321 413 ntBASIC2.1□□□□□ -2.07
SDC3O75056 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC2.1□□□□□ -2.07
SDC3O75056 AP001025.1-201ENST00000486139 332 ntBASIC2.1□□□□□ -2.07
SDC3O75056 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC2.1□□□□□ -2.07
SDC3O75056 RNU6-405P-201ENST00000516637 110 ntBASIC2.1□□□□□ -2.07
SDC3O75056 SNORA31.23-201ENST00000517219 133 ntBASIC2.1□□□□□ -2.07
SDC3O75056 BNIP3P6-201ENST00000549284 499 ntBASIC2.1□□□□□ -2.07
SDC3O75056 NDUFAF4P1-201ENST00000559425 519 ntBASIC2.1□□□□□ -2.07
SDC3O75056 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.1□□□□□ -2.07
SDC3O75056 MTCYBP33-201ENST00000575007 1130 ntBASIC2.1□□□□□ -2.07
SDC3O75056 AC008752.3-201ENST00000588113 712 ntBASIC2.1□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 180.4 ms