Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 RPS4XP11-201ENST00000446897 772 ntBASIC0.7□□□□□ -2.3
HMGB3O15347 AC132479.1-201ENST00000449160 144 ntBASIC0.7□□□□□ -2.3
HMGB3O15347 AC108059.3-201ENST00000456388 214 ntBASIC0.7□□□□□ -2.3
HMGB3O15347 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC0.7□□□□□ -2.3
HMGB3O15347 snoU109.2-201ENST00000459316 135 ntBASIC0.7□□□□□ -2.3
HMGB3O15347 snoU13.15-201ENST00000459407 104 ntBASIC0.7□□□□□ -2.3
HMGB3O15347 SUMO2P5-201ENST00000506790 245 ntBASIC0.7□□□□□ -2.3
HMGB3O15347 AC112198.4-201ENST00000515450 351 ntBASIC0.7□□□□□ -2.3
HMGB3O15347 RNU6-351P-201ENST00000516097 100 ntBASIC0.7□□□□□ -2.3
HMGB3O15347 RNA5SP490-201ENST00000517141 136 ntBASIC0.7□□□□□ -2.3
HMGB3O15347 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC0.7□□□□□ -2.3
HMGB3O15347 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.7□□□□□ -2.3
HMGB3O15347 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC0.7□□□□□ -2.3
HMGB3O15347 AL022345.2-201ENST00000606307 135 ntBASIC0.7□□□□□ -2.3
HMGB3O15347 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC0.7□□□□□ -2.3
HMGB3O15347 AC084824.5-201ENST00000612009 413 ntBASIC0.7□□□□□ -2.3
HMGB3O15347 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC0.7□□□□□ -2.3
HMGB3O15347 AC008163.1-202ENST00000636004 2889 ntBASIC0.69□□□□□ -2.3
HMGB3O15347 Y_RNA.111-201ENST00000363248 100 ntBASIC0.69□□□□□ -2.3
HMGB3O15347 SMIM11P1-201ENST00000369586 178 ntBASIC0.69□□□□□ -2.3
HMGB3O15347 MIR1284-201ENST00000408337 120 ntBASIC0.69□□□□□ -2.3
HMGB3O15347 RN7SKP266-201ENST00000410232 287 ntBASIC0.69□□□□□ -2.3
HMGB3O15347 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC0.69□□□□□ -2.3
HMGB3O15347 AP1B1P2-201ENST00000416196 106 ntBASIC0.69□□□□□ -2.3
HMGB3O15347 AC123900.1-201ENST00000420390 96 ntBASIC0.69□□□□□ -2.3
HMGB3O15347 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC0.69□□□□□ -2.3
HMGB3O15347 LARP1BP3-201ENST00000437229 869 ntBASIC0.69□□□□□ -2.3
HMGB3O15347 MTCO2P25-201ENST00000447065 681 ntBASIC0.69□□□□□ -2.3
HMGB3O15347 NDUFB1P2-201ENST00000449477 176 ntBASIC0.69□□□□□ -2.3
HMGB3O15347 AL139824.2-201ENST00000458731 1095 ntBASIC0.69□□□□□ -2.3
HMGB3O15347 AL163195.1-201ENST00000496941 348 ntBASIC0.69□□□□□ -2.3
HMGB3O15347 ACA64.5-201ENST00000516207 127 ntBASIC0.69□□□□□ -2.3
HMGB3O15347 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
HMGB3O15347 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC0.69□□□□□ -2.3
HMGB3O15347 AL391001.1-201ENST00000602747 715 ntBASIC0.69□□□□□ -2.3
HMGB3O15347 AC174048.1-201ENST00000603389 144 ntBASIC0.69□□□□□ -2.3
HMGB3O15347 AC090578.1-201ENST00000604955 591 ntBASIC0.69□□□□□ -2.3
HMGB3O15347 AP002802.2-201ENST00000605877 235 ntBASIC0.69□□□□□ -2.3
HMGB3O15347 AC006270.3-201ENST00000605967 1036 ntBASIC0.69□□□□□ -2.3
HMGB3O15347 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC0.69□□□□□ -2.3
HMGB3O15347 AC068880.4-201ENST00000623082 495 ntBASIC0.69□□□□□ -2.3
HMGB3O15347 AC010615.1-201ENST00000594254 1764 ntBASIC0.68□□□□□ -2.3
HMGB3O15347 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC0.68□□□□□ -2.3
HMGB3O15347 MIR532-201ENST00000385025 91 ntBASIC0.68□□□□□ -2.3
HMGB3O15347 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.68□□□□□ -2.3
HMGB3O15347 BTF3L4P1-201ENST00000413813 468 ntBASIC0.68□□□□□ -2.3
HMGB3O15347 AL627311.1-201ENST00000431514 115 ntBASIC0.68□□□□□ -2.3
HMGB3O15347 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC0.68□□□□□ -2.3
HMGB3O15347 FTH1P25-201ENST00000447665 469 ntBASIC0.68□□□□□ -2.3
HMGB3O15347 AL513124.1-201ENST00000450410 614 ntBASIC0.68□□□□□ -2.3
HMGB3O15347 MTND1P16-201ENST00000465177 898 ntBASIC0.68□□□□□ -2.3
HMGB3O15347 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC0.68□□□□□ -2.3
HMGB3O15347 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC0.68□□□□□ -2.3
HMGB3O15347 SCARNA16.2-201ENST00000516520 172 ntBASIC0.68□□□□□ -2.3
HMGB3O15347 RNU5A-4P-201ENST00000516588 111 ntBASIC0.68□□□□□ -2.3
HMGB3O15347 RNA5SP481-201ENST00000516814 122 ntBASIC0.68□□□□□ -2.3
HMGB3O15347 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC0.68□□□□□ -2.3
HMGB3O15347 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC0.68□□□□□ -2.3
HMGB3O15347 AL022154.1-201ENST00000604698 785 ntBASIC0.68□□□□□ -2.3
HMGB3O15347 AC106800.4-201ENST00000614905 153 ntBASIC0.68□□□□□ -2.3
HMGB3O15347 RMST_4.1-201ENST00000616886 107 ntBASIC0.68□□□□□ -2.3
HMGB3O15347 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC0.68□□□□□ -2.3
HMGB3O15347 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC0.67□□□□□ -2.3
HMGB3O15347 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC0.67□□□□□ -2.3
HMGB3O15347 MIR412-201ENST00000362142 91 ntBASIC0.67□□□□□ -2.3
HMGB3O15347 SNORD3E-201ENST00000362899 217 ntBASIC0.67□□□□□ -2.3
HMGB3O15347 SNORD32B-201ENST00000364460 84 ntBASIC0.67□□□□□ -2.3
HMGB3O15347 SNORA40.2-201ENST00000390847 128 ntBASIC0.67□□□□□ -2.3
HMGB3O15347 MTND3P20-201ENST00000407663 186 ntBASIC0.67□□□□□ -2.3
HMGB3O15347 MIR320C1-201ENST00000408566 88 ntBASIC0.67□□□□□ -2.3
HMGB3O15347 USP9YP21-201ENST00000420603 432 ntBASIC0.67□□□□□ -2.3
HMGB3O15347 PIGFP2-201ENST00000421400 651 ntBASIC0.67□□□□□ -2.3
HMGB3O15347 AC099677.2-201ENST00000436385 175 ntBASIC0.67□□□□□ -2.3
HMGB3O15347 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC0.67□□□□□ -2.3
HMGB3O15347 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC0.67□□□□□ -2.3
HMGB3O15347 AC103851.1-201ENST00000506833 274 ntBASIC0.67□□□□□ -2.3
HMGB3O15347 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC0.67□□□□□ -2.3
HMGB3O15347 RN7SKP88-201ENST00000516847 250 ntBASIC0.67□□□□□ -2.3
HMGB3O15347 RNU6-677P-201ENST00000516914 101 ntBASIC0.67□□□□□ -2.3
HMGB3O15347 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC0.67□□□□□ -2.3
HMGB3O15347 AC004817.2-201ENST00000561794 651 ntBASIC0.67□□□□□ -2.3
HMGB3O15347 MIR3664-201ENST00000579074 99 ntBASIC0.67□□□□□ -2.3
HMGB3O15347 AP005136.1-201ENST00000579765 429 ntBASIC0.67□□□□□ -2.3
HMGB3O15347 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
HMGB3O15347 AC099785.1-201ENST00000605697 437 ntBASIC0.67□□□□□ -2.3
HMGB3O15347 MIR15A-201ENST00000607334 83 ntBASIC0.67□□□□□ -2.3
HMGB3O15347 AL365434.2-201ENST00000607979 234 ntBASIC0.67□□□□□ -2.3
HMGB3O15347 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.67□□□□□ -2.3
HMGB3O15347 AL021879.1-201ENST00000611756 288 ntBASIC0.67□□□□□ -2.3
HMGB3O15347 7SK.8-201ENST00000612110 250 ntBASIC0.67□□□□□ -2.3
HMGB3O15347 AC130324.3-201ENST00000614165 542 ntBASIC0.67□□□□□ -2.3
HMGB3O15347 7SK.11-201ENST00000615477 250 ntBASIC0.67□□□□□ -2.3
HMGB3O15347 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.67□□□□□ -2.3
HMGB3O15347 7SK.13-201ENST00000622040 250 ntBASIC0.67□□□□□ -2.3
HMGB3O15347 OR4G3P-201ENST00000633500 913 ntBASIC0.67□□□□□ -2.3
HMGB3O15347 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC0.67□□□□□ -2.3
HMGB3O15347 HSBP1P2-201ENST00000299671 229 ntBASIC0.66□□□□□ -2.3
HMGB3O15347 SNORA63D-201ENST00000364359 132 ntBASIC0.66□□□□□ -2.3
HMGB3O15347 RNU6-621P-201ENST00000364752 109 ntBASIC0.66□□□□□ -2.3
HMGB3O15347 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC0.66□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms