Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC108938.1-201ENST00000451204 136 ntBASIC2.9□□□□□ -1.95
HOXC11O43248 AL109933.2-201ENST00000452651 260 ntBASIC2.9□□□□□ -1.95
HOXC11O43248 AC080013.2-201ENST00000460866 323 ntBASIC2.9□□□□□ -1.95
HOXC11O43248 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC2.9□□□□□ -1.95
HOXC11O43248 SMURF2P1-201ENST00000514992 481 ntBASIC2.9□□□□□ -1.95
HOXC11O43248 AC087854.1-201ENST00000519706 414 ntBASIC2.9□□□□□ -1.95
HOXC11O43248 RNU6-323P-201ENST00000521915 107 ntBASIC2.9□□□□□ -1.95
HOXC11O43248 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.9□□□□□ -1.95
HOXC11O43248 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXC11O43248 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXC11O43248 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.9□□□□□ -1.95
HOXC11O43248 AC073410.2-201ENST00000603240 332 ntBASIC2.9□□□□□ -1.95
HOXC11O43248 AC024581.2-201ENST00000619986 252 ntBASIC2.9□□□□□ -1.95
HOXC11O43248 AC007792.1-201ENST00000623023 402 ntBASIC2.9□□□□□ -1.95
HOXC11O43248 MIR3688-2-201ENST00000636963 87 ntBASIC2.9□□□□□ -1.95
HOXC11O43248 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.9□□□□□ -1.95
HOXC11O43248 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
HOXC11O43248 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.9□□□□□ -1.95
HOXC11O43248 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
HOXC11O43248 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.89□□□□□ -1.95
HOXC11O43248 RNU6-1010P-201ENST00000362757 107 ntBASIC2.89□□□□□ -1.95
HOXC11O43248 Y_RNA.373-201ENST00000365600 103 ntBASIC2.89□□□□□ -1.95
HOXC11O43248 MIR9-1-201ENST00000385198 89 ntBASIC2.89□□□□□ -1.95
HOXC11O43248 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXC11O43248 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.89□□□□□ -1.95
HOXC11O43248 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.89□□□□□ -1.95
HOXC11O43248 NDUFAF4P4-201ENST00000454883 502 ntBASIC2.89□□□□□ -1.95
HOXC11O43248 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXC11O43248 AC087884.1-201ENST00000469738 328 ntBASIC2.89□□□□□ -1.95
HOXC11O43248 AC092989.1-201ENST00000481235 277 ntBASIC2.89□□□□□ -1.95
HOXC11O43248 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.89□□□□□ -1.95
HOXC11O43248 RN7SKP43-201ENST00000516173 320 ntBASIC2.89□□□□□ -1.95
HOXC11O43248 AC109329.1-201ENST00000518744 317 ntBASIC2.89□□□□□ -1.95
HOXC11O43248 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXC11O43248 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.89□□□□□ -1.95
HOXC11O43248 AP000763.2-201ENST00000540641 163 ntBASIC2.89□□□□□ -1.95
HOXC11O43248 AC027176.1-201ENST00000560204 514 ntBASIC2.89□□□□□ -1.95
HOXC11O43248 AC090897.2-201ENST00000581715 130 ntBASIC2.89□□□□□ -1.95
HOXC11O43248 MIR4298-201ENST00000584380 73 ntBASIC2.89□□□□□ -1.95
HOXC11O43248 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.89□□□□□ -1.95
HOXC11O43248 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.89□□□□□ -1.95
HOXC11O43248 AC121333.1-201ENST00000567488 2709 ntBASIC2.88□□□□□ -1.95
HOXC11O43248 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.88□□□□□ -1.95
HOXC11O43248 RNU6-622P-201ENST00000384272 103 ntBASIC2.88□□□□□ -1.95
HOXC11O43248 RNU6-220P-201ENST00000390919 107 ntBASIC2.88□□□□□ -1.95
HOXC11O43248 AL138827.1-201ENST00000402666 306 ntBASIC2.88□□□□□ -1.95
HOXC11O43248 RNU6ATAC25P-201ENST00000408798 117 ntBASIC2.88□□□□□ -1.95
HOXC11O43248 RNA5SP21-201ENST00000410917 96 ntBASIC2.88□□□□□ -1.95
HOXC11O43248 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.88□□□□□ -1.95
HOXC11O43248 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.88□□□□□ -1.95
HOXC11O43248 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.88□□□□□ -1.95
HOXC11O43248 AC104389.3-201ENST00000445629 235 ntBASIC2.88□□□□□ -1.95
HOXC11O43248 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC2.88□□□□□ -1.95
HOXC11O43248 EEF1B2P7-201ENST00000451177 676 ntBASIC2.88□□□□□ -1.95
HOXC11O43248 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.88□□□□□ -1.95
HOXC11O43248 AC117503.1-201ENST00000472241 394 ntBASIC2.88□□□□□ -1.95
HOXC11O43248 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.88□□□□□ -1.95
HOXC11O43248 AP001025.1-201ENST00000486139 332 ntBASIC2.88□□□□□ -1.95
HOXC11O43248 AK3P2-201ENST00000507976 429 ntBASIC2.88□□□□□ -1.95
HOXC11O43248 CKS1BP7-201ENST00000522230 235 ntBASIC2.88□□□□□ -1.95
HOXC11O43248 COPS8P3-201ENST00000526024 482 ntBASIC2.88□□□□□ -1.95
HOXC11O43248 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC2.88□□□□□ -1.95
HOXC11O43248 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.88□□□□□ -1.95
HOXC11O43248 AL121757.2-201ENST00000611223 313 ntBASIC2.88□□□□□ -1.95
HOXC11O43248 AL359198.2-201ENST00000611836 194 ntBASIC2.88□□□□□ -1.95
HOXC11O43248 AC107871.2-201ENST00000612894 502 ntBASIC2.88□□□□□ -1.95
HOXC11O43248 uc_338.15-201ENST00000615470 191 ntBASIC2.88□□□□□ -1.95
HOXC11O43248 U6atac.1-201ENST00000616025 117 ntBASIC2.88□□□□□ -1.95
HOXC11O43248 AC097372.5-201ENST00000623665 376 ntBASIC2.88□□□□□ -1.95
HOXC11O43248 AC024614.3-201ENST00000637860 256 ntBASIC2.88□□□□□ -1.95
HOXC11O43248 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC2.88□□□□□ -1.95
HOXC11O43248 AC002543.1-201ENST00000299783 1954 ntBASIC2.88□□□□□ -1.95
HOXC11O43248 AL136360.1-201ENST00000503377 1900 ntBASIC2.87□□□□□ -1.95
HOXC11O43248 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
HOXC11O43248 VTRNA1-1-201ENST00000363120 99 ntBASIC2.87□□□□□ -1.95
HOXC11O43248 RNU6-105P-201ENST00000363909 104 ntBASIC2.87□□□□□ -1.95
HOXC11O43248 RNU6-827P-201ENST00000365553 106 ntBASIC2.87□□□□□ -1.95
HOXC11O43248 RNU1-57P-201ENST00000384491 166 ntBASIC2.87□□□□□ -1.95
HOXC11O43248 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXC11O43248 GSTA11P-201ENST00000452866 669 ntBASIC2.87□□□□□ -1.95
HOXC11O43248 SNORD109B-201ENST00000458961 67 ntBASIC2.87□□□□□ -1.95
HOXC11O43248 SNORD109A-201ENST00000459128 67 ntBASIC2.87□□□□□ -1.95
HOXC11O43248 AC073901.1-201ENST00000462471 408 ntBASIC2.87□□□□□ -1.95
HOXC11O43248 CKS1BP2-201ENST00000497342 240 ntBASIC2.87□□□□□ -1.95
HOXC11O43248 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXC11O43248 AC011352.1-201ENST00000512300 793 ntBASIC2.87□□□□□ -1.95
HOXC11O43248 RNU6-1069P-201ENST00000516612 133 ntBASIC2.87□□□□□ -1.95
HOXC11O43248 AC109329.2-201ENST00000519658 482 ntBASIC2.87□□□□□ -1.95
HOXC11O43248 PSMA3P-201ENST00000555485 635 ntBASIC2.87□□□□□ -1.95
HOXC11O43248 AL133241.1-201ENST00000556832 487 ntBASIC2.87□□□□□ -1.95
HOXC11O43248 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC2.87□□□□□ -1.95
HOXC11O43248 AC107304.1-201ENST00000604229 296 ntBASIC2.87□□□□□ -1.95
HOXC11O43248 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
HOXC11O43248 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC2.87□□□□□ -1.95
HOXC11O43248 MIR449A-201ENST00000362113 91 ntBASIC2.86□□□□□ -1.95
HOXC11O43248 RNU6-534P-201ENST00000364877 106 ntBASIC2.86□□□□□ -1.95
HOXC11O43248 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
HOXC11O43248 MIR512-1-201ENST00000384913 84 ntBASIC2.86□□□□□ -1.95
HOXC11O43248 MIR1277-201ENST00000408536 78 ntBASIC2.86□□□□□ -1.95
HOXC11O43248 RNU6-1140P-201ENST00000410517 106 ntBASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms