Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SNORA19.2-201ENST00000516013 114 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 SNORA31.6-201ENST00000516241 130 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 SNORA43.2-201ENST00000516652 128 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 RNU6-1314P-201ENST00000517139 104 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 BTF3P12-201ENST00000519620 469 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 RNU6-323P-201ENST00000521915 107 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 AC107953.1-201ENST00000522216 297 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.4□□□□□ -2.03
NKX3-1Q99801 HPRT1P3-201ENST00000539521 576 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 ELOCP31-201ENST00000540463 467 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 AP000763.2-201ENST00000540641 163 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 EIF4BP1-201ENST00000554881 351 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 AC007151.1-201ENST00000572774 483 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 MIR3941-201ENST00000582572 103 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 AC008121.1-201ENST00000603244 268 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 RBM11P1-201ENST00000604951 799 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 AC093732.2-201ENST00000607950 274 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 AL136221.1-201ENST00000621449 509 ntBASIC2.4□□□□□ -2.03
NKX3-1Q99801 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.4□□□□□ -2.03
NKX3-1Q99801 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.4□□□□□ -2.03
NKX3-1Q99801 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
NKX3-1Q99801 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
NKX3-1Q99801 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
NKX3-1Q99801 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
NKX3-1Q99801 RNU6-858P-201ENST00000362436 107 ntBASIC2.39□□□□□ -2.03
NKX3-1Q99801 RNU6-78P-201ENST00000362897 107 ntBASIC2.39□□□□□ -2.03
NKX3-1Q99801 RNU6-254P-201ENST00000363377 107 ntBASIC2.39□□□□□ -2.03
NKX3-1Q99801 SNORA5B-201ENST00000363786 132 ntBASIC2.39□□□□□ -2.03
NKX3-1Q99801 SNORA18.3-201ENST00000384122 132 ntBASIC2.39□□□□□ -2.03
NKX3-1Q99801 RNU6-876P-201ENST00000391295 104 ntBASIC2.39□□□□□ -2.03
NKX3-1Q99801 EIF4E2P1-201ENST00000393781 255 ntBASIC2.39□□□□□ -2.03
NKX3-1Q99801 AL512633.1-201ENST00000399931 655 ntBASIC2.39□□□□□ -2.03
NKX3-1Q99801 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2.39□□□□□ -2.03
NKX3-1Q99801 ARL5AP1-201ENST00000418991 388 ntBASIC2.39□□□□□ -2.03
NKX3-1Q99801 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.39□□□□□ -2.03
NKX3-1Q99801 AL139413.1-201ENST00000421309 217 ntBASIC2.39□□□□□ -2.03
NKX3-1Q99801 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.39□□□□□ -2.03
NKX3-1Q99801 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.39□□□□□ -2.03
NKX3-1Q99801 AC007547.1-201ENST00000462177 490 ntBASIC2.39□□□□□ -2.03
NKX3-1Q99801 RPL7P43-201ENST00000478876 753 ntBASIC2.39□□□□□ -2.03
NKX3-1Q99801 AC096576.1-201ENST00000489014 359 ntBASIC2.39□□□□□ -2.03
NKX3-1Q99801 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.39□□□□□ -2.03
NKX3-1Q99801 CYCSP27-201ENST00000527643 293 ntBASIC2.39□□□□□ -2.03
NKX3-1Q99801 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC2.39□□□□□ -2.03
NKX3-1Q99801 PSMA3P-201ENST00000555485 635 ntBASIC2.39□□□□□ -2.03
NKX3-1Q99801 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.39□□□□□ -2.03
NKX3-1Q99801 AL391813.1-201ENST00000603098 260 ntBASIC2.39□□□□□ -2.03
NKX3-1Q99801 BNIP3P10-201ENST00000605360 577 ntBASIC2.39□□□□□ -2.03
NKX3-1Q99801 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.39□□□□□ -2.03
NKX3-1Q99801 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC2.39□□□□□ -2.03
NKX3-1Q99801 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC2.39□□□□□ -2.03
NKX3-1Q99801 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.39□□□□□ -2.03
NKX3-1Q99801 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
NKX3-1Q99801 AC004944.1-201ENST00000517807 3059 ntBASIC2.38□□□□□ -2.03
NKX3-1Q99801 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
NKX3-1Q99801 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.38□□□□□ -2.03
NKX3-1Q99801 RNU6-428P-201ENST00000362942 107 ntBASIC2.38□□□□□ -2.03
NKX3-1Q99801 Y_RNA.111-201ENST00000363248 100 ntBASIC2.38□□□□□ -2.03
NKX3-1Q99801 Y_RNA.157-201ENST00000363638 102 ntBASIC2.38□□□□□ -2.03
NKX3-1Q99801 Y_RNA.303-201ENST00000364998 94 ntBASIC2.38□□□□□ -2.03
NKX3-1Q99801 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.38□□□□□ -2.03
NKX3-1Q99801 RNU6-19P-201ENST00000384718 107 ntBASIC2.38□□□□□ -2.03
NKX3-1Q99801 RNA5SP210-201ENST00000391034 120 ntBASIC2.38□□□□□ -2.03
NKX3-1Q99801 RAP1BP3-201ENST00000407180 549 ntBASIC2.38□□□□□ -2.03
NKX3-1Q99801 RNA5SP118-201ENST00000410385 109 ntBASIC2.38□□□□□ -2.03
NKX3-1Q99801 RNU6-1328P-201ENST00000410938 106 ntBASIC2.38□□□□□ -2.03
NKX3-1Q99801 RNU2-25P-201ENST00000411041 191 ntBASIC2.38□□□□□ -2.03
NKX3-1Q99801 AC096649.2-201ENST00000416186 393 ntBASIC2.38□□□□□ -2.03
NKX3-1Q99801 AL096701.2-201ENST00000416920 238 ntBASIC2.38□□□□□ -2.03
NKX3-1Q99801 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.38□□□□□ -2.03
NKX3-1Q99801 AC107626.1-201ENST00000471084 183 ntBASIC2.38□□□□□ -2.03
NKX3-1Q99801 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.38□□□□□ -2.03
NKX3-1Q99801 RNU6-826P-201ENST00000516827 104 ntBASIC2.38□□□□□ -2.03
NKX3-1Q99801 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
NKX3-1Q99801 AP005597.4-201ENST00000526762 229 ntBASIC2.38□□□□□ -2.03
NKX3-1Q99801 GLYCAM1-201ENST00000546596 285 ntBASIC2.38□□□□□ -2.03
NKX3-1Q99801 AC025423.5-201ENST00000550230 219 ntBASIC2.38□□□□□ -2.03
NKX3-1Q99801 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.38□□□□□ -2.03
NKX3-1Q99801 MIR3605-201ENST00000583214 100 ntBASIC2.38□□□□□ -2.03
NKX3-1Q99801 MIR3942-201ENST00000585264 109 ntBASIC2.38□□□□□ -2.03
NKX3-1Q99801 AC018638.8-201ENST00000588755 281 ntBASIC2.38□□□□□ -2.03
NKX3-1Q99801 AC005498.1-201ENST00000592125 465 ntBASIC2.38□□□□□ -2.03
NKX3-1Q99801 AC024153.1-201ENST00000603103 365 ntBASIC2.38□□□□□ -2.03
NKX3-1Q99801 RPL23AP88-201ENST00000605759 454 ntBASIC2.38□□□□□ -2.03
NKX3-1Q99801 AC097372.5-201ENST00000623665 376 ntBASIC2.38□□□□□ -2.03
NKX3-1Q99801 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
NKX3-1Q99801 Y_RNA.160-201ENST00000363677 92 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 SNORD116-20-201ENST00000384529 92 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 RNU6-851P-201ENST00000384565 107 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 MIR450B-201ENST00000401182 78 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 FO393413.1-201ENST00000402892 195 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 RNU6-1140P-201ENST00000410517 106 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC2.37□□□□□ -2.03
NKX3-1Q99801 USP9YP20-201ENST00000419224 558 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 PTGES3P4-201ENST00000426243 356 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 TOMM20P4-201ENST00000427861 435 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.37□□□□□ -2.03
NKX3-1Q99801 AP001324.2-201ENST00000461163 319 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 AP000852.1-201ENST00000472460 573 ntBASIC2.37□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 156.4 ms