Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL670379.2-201ENST00000604983 252 ntBASIC4.37□□□□□ -1.71
MSX1P28360 AL591034.3-201ENST00000605511 685 ntBASIC4.37□□□□□ -1.71
MSX1P28360 Y_RNA.802-201ENST00000614892 130 ntBASIC4.37□□□□□ -1.71
MSX1P28360 AL354798.1-201ENST00000622505 329 ntBASIC4.37□□□□□ -1.71
MSX1P28360 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC4.37□□□□□ -1.71
MSX1P28360 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
MSX1P28360 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.37□□□□□ -1.71
MSX1P28360 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
MSX1P28360 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
MSX1P28360 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
MSX1P28360 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
MSX1P28360 AC134026.1-201ENST00000623249 2239 ntBASIC4.37□□□□□ -1.71
MSX1P28360 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
MSX1P28360 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
MSX1P28360 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.37□□□□□ -1.71
MSX1P28360 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
MSX1P28360 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.36□□□□□ -1.71
MSX1P28360 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
MSX1P28360 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
MSX1P28360 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.36□□□□□ -1.71
MSX1P28360 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.36□□□□□ -1.71
MSX1P28360 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.36□□□□□ -1.71
MSX1P28360 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
MSX1P28360 Y_RNA.24-201ENST00000362508 103 ntBASIC4.36□□□□□ -1.71
MSX1P28360 RNU6-454P-201ENST00000364292 107 ntBASIC4.36□□□□□ -1.71
MSX1P28360 RNA5SP515-201ENST00000364570 118 ntBASIC4.36□□□□□ -1.71
MSX1P28360 RNU6-429P-201ENST00000384582 108 ntBASIC4.36□□□□□ -1.71
MSX1P28360 BPY2DP-201ENST00000422208 265 ntBASIC4.36□□□□□ -1.71
MSX1P28360 CKS1BP6-201ENST00000424932 240 ntBASIC4.36□□□□□ -1.71
MSX1P28360 AL356535.1-201ENST00000440335 398 ntBASIC4.36□□□□□ -1.71
MSX1P28360 AC012308.1-201ENST00000451232 178 ntBASIC4.36□□□□□ -1.71
MSX1P28360 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
MSX1P28360 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
MSX1P28360 SNORD108-201ENST00000459332 71 ntBASIC4.36□□□□□ -1.71
MSX1P28360 AC090525.1-201ENST00000479116 478 ntBASIC4.36□□□□□ -1.71
MSX1P28360 AC006517.1-201ENST00000480485 328 ntBASIC4.36□□□□□ -1.71
MSX1P28360 SCARNA8-201ENST00000515924 131 ntBASIC4.36□□□□□ -1.71
MSX1P28360 RN7SKP179-201ENST00000516126 217 ntBASIC4.36□□□□□ -1.71
MSX1P28360 RNU6-1007P-201ENST00000516586 107 ntBASIC4.36□□□□□ -1.71
MSX1P28360 RNU6-453P-201ENST00000516819 85 ntBASIC4.36□□□□□ -1.71
MSX1P28360 RNA5SP170-201ENST00000517150 101 ntBASIC4.36□□□□□ -1.71
MSX1P28360 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.36□□□□□ -1.71
MSX1P28360 AP001880.2-201ENST00000538233 448 ntBASIC4.36□□□□□ -1.71
MSX1P28360 PARP1P2-201ENST00000556806 195 ntBASIC4.36□□□□□ -1.71
MSX1P28360 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC4.36□□□□□ -1.71
MSX1P28360 AL391813.1-201ENST00000603098 260 ntBASIC4.36□□□□□ -1.71
MSX1P28360 SNRPGP20-201ENST00000604477 205 ntBASIC4.36□□□□□ -1.71
MSX1P28360 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
MSX1P28360 AP001340.1-201ENST00000624405 217 ntBASIC4.36□□□□□ -1.71
MSX1P28360 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
MSX1P28360 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
MSX1P28360 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
MSX1P28360 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
MSX1P28360 AL133243.3-201ENST00000617415 3004 ntBASIC4.36□□□□□ -1.71
MSX1P28360 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
MSX1P28360 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.36□□□□□ -1.71
MSX1P28360 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
MSX1P28360 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
MSX1P28360 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.36□□□□□ -1.71
MSX1P28360 AC087190.4-201ENST00000574616 8334 ntBASIC4.35□□□□□ -1.71
MSX1P28360 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
MSX1P28360 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
MSX1P28360 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
MSX1P28360 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
MSX1P28360 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.35□□□□□ -1.71
MSX1P28360 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
MSX1P28360 AC068538.1-201ENST00000376856 336 ntBASIC4.35□□□□□ -1.71
MSX1P28360 SNORA72.4-201ENST00000384174 132 ntBASIC4.35□□□□□ -1.71
MSX1P28360 AL355497.1-201ENST00000406262 551 ntBASIC4.35□□□□□ -1.71
MSX1P28360 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC4.35□□□□□ -1.71
MSX1P28360 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.35□□□□□ -1.71
MSX1P28360 EEF1B2P7-201ENST00000451177 676 ntBASIC4.35□□□□□ -1.71
MSX1P28360 AC146507.2-201ENST00000460608 476 ntBASIC4.35□□□□□ -1.71
MSX1P28360 AL591473.1-201ENST00000464297 313 ntBASIC4.35□□□□□ -1.71
MSX1P28360 AC092991.1-201ENST00000477176 376 ntBASIC4.35□□□□□ -1.71
MSX1P28360 SCARNA22-201ENST00000503991 125 ntBASIC4.35□□□□□ -1.71
MSX1P28360 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC4.35□□□□□ -1.71
MSX1P28360 AC006499.6-201ENST00000511169 607 ntBASIC4.35□□□□□ -1.71
MSX1P28360 RAC1P5-201ENST00000512182 576 ntBASIC4.35□□□□□ -1.71
MSX1P28360 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC4.35□□□□□ -1.71
MSX1P28360 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.35□□□□□ -1.71
MSX1P28360 CYP4A27P-201ENST00000567218 190 ntBASIC4.35□□□□□ -1.71
MSX1P28360 MTND6P33-201ENST00000571794 183 ntBASIC4.35□□□□□ -1.71
MSX1P28360 AL451007.1-201ENST00000595491 289 ntBASIC4.35□□□□□ -1.71
MSX1P28360 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
MSX1P28360 AF127577.6-201ENST00000623352 2191 ntBASIC4.35□□□□□ -1.71
MSX1P28360 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
MSX1P28360 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
MSX1P28360 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.35□□□□□ -1.71
MSX1P28360 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.35□□□□□ -1.71
MSX1P28360 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.35□□□□□ -1.71
MSX1P28360 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
MSX1P28360 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
MSX1P28360 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
MSX1P28360 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.35□□□□□ -1.71
MSX1P28360 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.35□□□□□ -1.71
MSX1P28360 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.34□□□□□ -1.71
MSX1P28360 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.34□□□□□ -1.71
MSX1P28360 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
MSX1P28360 RN7SKP280-201ENST00000364196 304 ntBASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 167.7 ms