Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC3.43□□□□□ -1.86
HMGB1P09429 AC115990.1-201ENST00000526957 301 ntBASIC3.43□□□□□ -1.86
HMGB1P09429 AL160281.1-201ENST00000605307 311 ntBASIC3.43□□□□□ -1.86
HMGB1P09429 AC091953.5-201ENST00000622919 233 ntBASIC3.43□□□□□ -1.86
HMGB1P09429 AC241585.2-209ENST00000638217 143 ntBASIC3.43□□□□□ -1.86
HMGB1P09429 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC3.43□□□□□ -1.86
HMGB1P09429 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
HMGB1P09429 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.43□□□□□ -1.86
HMGB1P09429 RNU6-743P-201ENST00000364151 106 ntBASIC3.42□□□□□ -1.86
HMGB1P09429 MIR512-1-201ENST00000384913 84 ntBASIC3.42□□□□□ -1.86
HMGB1P09429 CD3D-202ENST00000392884 476 ntTSL 2 BASIC3.42□□□□□ -1.86
HMGB1P09429 Y_RNA.597-201ENST00000410463 100 ntBASIC3.42□□□□□ -1.86
HMGB1P09429 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.42□□□□□ -1.86
HMGB1P09429 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC3.42□□□□□ -1.86
HMGB1P09429 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.42□□□□□ -1.86
HMGB1P09429 MTATP6P26-201ENST00000445926 662 ntBASIC3.42□□□□□ -1.86
HMGB1P09429 RN7SKP256-201ENST00000517201 314 ntBASIC3.42□□□□□ -1.86
HMGB1P09429 SNORA31.25-201ENST00000517242 134 ntBASIC3.42□□□□□ -1.86
HMGB1P09429 MIR5694-201ENST00000581190 76 ntBASIC3.42□□□□□ -1.86
HMGB1P09429 HULC.1-201ENST00000612720 240 ntBASIC3.42□□□□□ -1.86
HMGB1P09429 OR5AK4P-201ENST00000635912 903 ntBASIC3.42□□□□□ -1.86
HMGB1P09429 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HMGB1P09429 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HMGB1P09429 AC022018.1-201ENST00000430685 241 ntBASIC3.41□□□□□ -1.86
HMGB1P09429 RPS29P6-201ENST00000438196 145 ntBASIC3.41□□□□□ -1.86
HMGB1P09429 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC3.41□□□□□ -1.86
HMGB1P09429 SRRM1P2-201ENST00000464531 1192 ntBASIC3.41□□□□□ -1.86
HMGB1P09429 CCDC34P1-201ENST00000507441 517 ntBASIC3.41□□□□□ -1.86
HMGB1P09429 SLC25A15P5-201ENST00000508033 253 ntBASIC3.41□□□□□ -1.86
HMGB1P09429 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC3.41□□□□□ -1.86
HMGB1P09429 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC3.41□□□□□ -1.86
HMGB1P09429 RNU5F-2P-201ENST00000516066 82 ntBASIC3.41□□□□□ -1.86
HMGB1P09429 SNORA40.12-201ENST00000516329 111 ntBASIC3.41□□□□□ -1.86
HMGB1P09429 RNU6-1038P-201ENST00000516516 104 ntBASIC3.41□□□□□ -1.86
HMGB1P09429 RN7SKP57-201ENST00000517248 293 ntBASIC3.41□□□□□ -1.86
HMGB1P09429 AP003034.1-201ENST00000534621 422 ntBASIC3.41□□□□□ -1.86
HMGB1P09429 BNIP3P16-201ENST00000589779 534 ntBASIC3.41□□□□□ -1.86
HMGB1P09429 AC007229.1-201ENST00000590455 412 ntBASIC3.41□□□□□ -1.86
HMGB1P09429 AC017083.3-201ENST00000609955 700 ntBASIC3.41□□□□□ -1.86
HMGB1P09429 AL020991.1-201ENST00000612314 373 ntBASIC3.41□□□□□ -1.86
HMGB1P09429 AL442067.2-201ENST00000614033 363 ntBASIC3.41□□□□□ -1.86
HMGB1P09429 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.41□□□□□ -1.86
HMGB1P09429 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
HMGB1P09429 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HMGB1P09429 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC3.4□□□□□ -1.87
HMGB1P09429 AL117339.3-201ENST00000418733 162 ntBASIC3.4□□□□□ -1.87
HMGB1P09429 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC3.4□□□□□ -1.87
HMGB1P09429 RPS15AP10-201ENST00000432472 382 ntBASIC3.4□□□□□ -1.87
HMGB1P09429 FDX1P2-201ENST00000450769 375 ntBASIC3.4□□□□□ -1.87
HMGB1P09429 AL137159.1-201ENST00000452808 512 ntBASIC3.4□□□□□ -1.87
HMGB1P09429 AC087884.1-201ENST00000469738 328 ntBASIC3.4□□□□□ -1.87
HMGB1P09429 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.4□□□□□ -1.87
HMGB1P09429 SCARNA13-201ENST00000516672 275 ntBASIC3.4□□□□□ -1.87
HMGB1P09429 RNA5SP137-201ENST00000516833 135 ntBASIC3.4□□□□□ -1.87
HMGB1P09429 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC3.4□□□□□ -1.87
HMGB1P09429 NDUFA5P6-201ENST00000542110 379 ntBASIC3.4□□□□□ -1.87
HMGB1P09429 MIR4529-201ENST00000578110 78 ntBASIC3.4□□□□□ -1.87
HMGB1P09429 AC103987.3-201ENST00000582071 292 ntBASIC3.4□□□□□ -1.87
HMGB1P09429 MIR4325-201ENST00000583049 90 ntBASIC3.4□□□□□ -1.87
HMGB1P09429 ATP5A1P2-202ENST00000616464 443 ntBASIC3.4□□□□□ -1.87
HMGB1P09429 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC3.4□□□□□ -1.87
HMGB1P09429 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.4□□□□□ -1.87
HMGB1P09429 MIR203B-201ENST00000636080 86 ntBASIC3.4□□□□□ -1.87
HMGB1P09429 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
HMGB1P09429 SNORA16B-201ENST00000364674 135 ntBASIC3.39□□□□□ -1.87
HMGB1P09429 OR5H15-201ENST00000383696 930 ntBASIC3.39□□□□□ -1.87
HMGB1P09429 MIR144-201ENST00000384886 86 ntBASIC3.39□□□□□ -1.87
HMGB1P09429 MIR592-201ENST00000384959 97 ntBASIC3.39□□□□□ -1.87
HMGB1P09429 SNORA48.5-201ENST00000391143 135 ntBASIC3.39□□□□□ -1.87
HMGB1P09429 AC010975.2-201ENST00000427781 588 ntBASIC3.39□□□□□ -1.87
HMGB1P09429 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC3.39□□□□□ -1.87
HMGB1P09429 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.39□□□□□ -1.87
HMGB1P09429 MTND3P5-201ENST00000512798 333 ntBASIC3.39□□□□□ -1.87
HMGB1P09429 SCGB1D5P-201ENST00000515134 247 ntBASIC3.39□□□□□ -1.87
HMGB1P09429 RNA5SP341-201ENST00000516261 117 ntBASIC3.39□□□□□ -1.87
HMGB1P09429 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.39□□□□□ -1.87
HMGB1P09429 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.39□□□□□ -1.87
HMGB1P09429 SNRPGP17-201ENST00000603780 214 ntBASIC3.39□□□□□ -1.87
HMGB1P09429 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.39□□□□□ -1.87
HMGB1P09429 AC048344.4-201ENST00000619744 527 ntBASIC3.39□□□□□ -1.87
HMGB1P09429 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC3.39□□□□□ -1.87
HMGB1P09429 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
HMGB1P09429 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
HMGB1P09429 AC108206.1-201ENST00000570186 4159 ntBASIC3.39□□□□□ -1.87
HMGB1P09429 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.39□□□□□ -1.87
HMGB1P09429 ZNF658B-202ENST00000615961 3375 ntBASIC3.38□□□□□ -1.87
HMGB1P09429 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
HMGB1P09429 RNU4-66P-201ENST00000365199 138 ntBASIC3.38□□□□□ -1.87
HMGB1P09429 RNU6-43P-201ENST00000384302 107 ntBASIC3.38□□□□□ -1.87
HMGB1P09429 Y_RNA.559-201ENST00000384686 107 ntBASIC3.38□□□□□ -1.87
HMGB1P09429 AL162578.1-201ENST00000406202 378 ntBASIC3.38□□□□□ -1.87
HMGB1P09429 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC3.38□□□□□ -1.87
HMGB1P09429 USP9YP18-201ENST00000425912 695 ntBASIC3.38□□□□□ -1.87
HMGB1P09429 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HMGB1P09429 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.38□□□□□ -1.87
HMGB1P09429 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC3.38□□□□□ -1.87
HMGB1P09429 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC3.38□□□□□ -1.87
HMGB1P09429 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HMGB1P09429 MTCO3P38-201ENST00000468910 766 ntBASIC3.38□□□□□ -1.87
HMGB1P09429 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms