Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AL590664.1-201ENST00000448065 339 ntBASIC3.28□□□□□ -1.88
VSX1Q9NZR4 RPS3AP46-201ENST00000448352 682 ntBASIC3.28□□□□□ -1.88
VSX1Q9NZR4 RNA5SP310-201ENST00000459084 116 ntBASIC3.28□□□□□ -1.88
VSX1Q9NZR4 snoU109.2-201ENST00000459316 135 ntBASIC3.28□□□□□ -1.88
VSX1Q9NZR4 HMGN2P13-201ENST00000476476 274 ntBASIC3.28□□□□□ -1.88
VSX1Q9NZR4 SNORA31.18-201ENST00000517043 134 ntBASIC3.28□□□□□ -1.88
VSX1Q9NZR4 H3F3AP1-201ENST00000559984 334 ntBASIC3.28□□□□□ -1.88
VSX1Q9NZR4 AC004817.2-201ENST00000561794 651 ntBASIC3.28□□□□□ -1.88
VSX1Q9NZR4 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.28□□□□□ -1.88
VSX1Q9NZR4 AC087499.8-201ENST00000578406 226 ntBASIC3.28□□□□□ -1.88
VSX1Q9NZR4 RNU1-30P-201ENST00000606575 163 ntBASIC3.28□□□□□ -1.88
VSX1Q9NZR4 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.28□□□□□ -1.88
VSX1Q9NZR4 AC007792.1-201ENST00000623023 402 ntBASIC3.28□□□□□ -1.88
VSX1Q9NZR4 AC243829.7-201ENST00000633081 225 ntBASIC3.28□□□□□ -1.88
VSX1Q9NZR4 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.28□□□□□ -1.88
VSX1Q9NZR4 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.28□□□□□ -1.89
VSX1Q9NZR4 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.89
VSX1Q9NZR4 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.27□□□□□ -1.89
VSX1Q9NZR4 RNU6-527P-201ENST00000363425 104 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 RNU6-105P-201ENST00000363909 104 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 RNU6-99P-201ENST00000364721 107 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 RNU6-336P-201ENST00000364891 107 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 SNORD14.1-201ENST00000365609 90 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 Z98749.2-208ENST00000381646 500 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 Y_RNA.389-201ENST00000383924 113 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 Y_RNA.401-201ENST00000383965 117 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 MIR30B-201ENST00000384850 88 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
VSX1Q9NZR4 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
VSX1Q9NZR4 SAR1AP2-201ENST00000392696 594 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 AC002075.2-201ENST00000425207 252 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.27□□□□□ -1.89
VSX1Q9NZR4 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.27□□□□□ -1.89
VSX1Q9NZR4 RPS29P31-201ENST00000446147 164 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 AC125238.1-201ENST00000448842 249 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.27□□□□□ -1.89
VSX1Q9NZR4 AC026784.1-201ENST00000507986 352 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 MRPS35P2-201ENST00000508242 191 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC3.27□□□□□ -1.89
VSX1Q9NZR4 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.27□□□□□ -1.89
VSX1Q9NZR4 AP002404.1-201ENST00000532005 451 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC3.27□□□□□ -1.89
VSX1Q9NZR4 AC008011.1-201ENST00000545989 227 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 HSBP1P1-201ENST00000555205 166 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 AC004584.2-201ENST00000570407 410 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 RN7SL703P-201ENST00000578485 302 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 MIR4474-201ENST00000579189 78 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 MIR5187-201ENST00000583479 76 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.27□□□□□ -1.89
VSX1Q9NZR4 VN1R91P-201ENST00000594377 169 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 AL355297.3-201ENST00000604082 446 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.27□□□□□ -1.89
VSX1Q9NZR4 AC009318.2-201ENST00000610917 651 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 AC002076.2-201ENST00000617362 122 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
VSX1Q9NZR4 AC087588.2-201ENST00000617667 426 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 AL136164.4-201ENST00000625013 2135 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.27□□□□□ -1.89
VSX1Q9NZR4 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
VSX1Q9NZR4 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
VSX1Q9NZR4 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.27□□□□□ -1.89
VSX1Q9NZR4 CDC27P3-201ENST00000635418 1910 ntBASIC3.27□□□□□ -1.89
VSX1Q9NZR4 MTND5P1-201ENST00000445440 1375 ntBASIC3.26□□□□□ -1.89
VSX1Q9NZR4 AC110774.1-201ENST00000623567 2018 ntBASIC3.26□□□□□ -1.89
VSX1Q9NZR4 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.26□□□□□ -1.89
VSX1Q9NZR4 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.26□□□□□ -1.89
VSX1Q9NZR4 RNA5SP42-201ENST00000364278 115 ntBASIC3.26□□□□□ -1.89
VSX1Q9NZR4 Y_RNA.556-201ENST00000384677 113 ntBASIC3.26□□□□□ -1.89
VSX1Q9NZR4 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.26□□□□□ -1.89
VSX1Q9NZR4 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.26□□□□□ -1.89
VSX1Q9NZR4 EIF1AXP1-201ENST00000419267 435 ntBASIC3.26□□□□□ -1.89
VSX1Q9NZR4 AL353997.1-201ENST00000432936 108 ntBASIC3.26□□□□□ -1.89
VSX1Q9NZR4 RPS29P7-201ENST00000439662 171 ntBASIC3.26□□□□□ -1.89
VSX1Q9NZR4 RPL26P9-201ENST00000457466 433 ntBASIC3.26□□□□□ -1.89
VSX1Q9NZR4 AL133162.1-201ENST00000463228 453 ntBASIC3.26□□□□□ -1.89
VSX1Q9NZR4 RPS29P27-201ENST00000463711 170 ntBASIC3.26□□□□□ -1.89
VSX1Q9NZR4 FO393415.2-201ENST00000480085 343 ntBASIC3.26□□□□□ -1.89
VSX1Q9NZR4 RPL23AP49-201ENST00000492925 468 ntBASIC3.26□□□□□ -1.89
VSX1Q9NZR4 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.26□□□□□ -1.89
VSX1Q9NZR4 MIR4738-201ENST00000579134 87 ntBASIC3.26□□□□□ -1.89
VSX1Q9NZR4 AC113195.1-201ENST00000579952 141 ntBASIC3.26□□□□□ -1.89
VSX1Q9NZR4 MIR4286-201ENST00000580651 93 ntBASIC3.26□□□□□ -1.89
VSX1Q9NZR4 AC104695.3-201ENST00000604052 296 ntBASIC3.26□□□□□ -1.89
VSX1Q9NZR4 AC006077.1-201ENST00000604746 343 ntBASIC3.26□□□□□ -1.89
VSX1Q9NZR4 HMGB1P24-202ENST00000615653 685 ntBASIC3.26□□□□□ -1.89
VSX1Q9NZR4 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.26□□□□□ -1.89
VSX1Q9NZR4 AC024581.2-201ENST00000619986 252 ntBASIC3.26□□□□□ -1.89
VSX1Q9NZR4 MIR4272-201ENST00000635924 64 ntBASIC3.26□□□□□ -1.89
VSX1Q9NZR4 HAUS6P2-201ENST00000433254 2404 ntBASIC3.26□□□□□ -1.89
VSX1Q9NZR4 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
VSX1Q9NZR4 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
VSX1Q9NZR4 AC110491.1-201ENST00000562191 2010 ntBASIC3.26□□□□□ -1.89
VSX1Q9NZR4 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
VSX1Q9NZR4 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
VSX1Q9NZR4 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
VSX1Q9NZR4 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
VSX1Q9NZR4 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
VSX1Q9NZR4 RNU6-428P-201ENST00000362942 107 ntBASIC3.25□□□□□ -1.89
VSX1Q9NZR4 RNU6-942P-201ENST00000363002 107 ntBASIC3.25□□□□□ -1.89
VSX1Q9NZR4 Y_RNA.452-201ENST00000384202 108 ntBASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 130.7 ms