Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.26□□□□□ -2.05
DDX28Q9NUL7 USP9YP27-201ENST00000418455 438 ntBASIC2.26□□□□□ -2.05
DDX28Q9NUL7 USP9YP20-201ENST00000419224 558 ntBASIC2.26□□□□□ -2.05
DDX28Q9NUL7 AC003685.2-201ENST00000422795 395 ntBASIC2.26□□□□□ -2.05
DDX28Q9NUL7 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC2.26□□□□□ -2.05
DDX28Q9NUL7 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC2.26□□□□□ -2.05
DDX28Q9NUL7 RPL7P12-201ENST00000446719 750 ntBASIC2.26□□□□□ -2.05
DDX28Q9NUL7 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC2.26□□□□□ -2.05
DDX28Q9NUL7 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC2.26□□□□□ -2.05
DDX28Q9NUL7 RPS3AP17-201ENST00000472594 777 ntBASIC2.26□□□□□ -2.05
DDX28Q9NUL7 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.26□□□□□ -2.05
DDX28Q9NUL7 AC096725.1-201ENST00000514266 313 ntBASIC2.26□□□□□ -2.05
DDX28Q9NUL7 SMURF2P1-201ENST00000514992 481 ntBASIC2.26□□□□□ -2.05
DDX28Q9NUL7 SNORA25.11-201ENST00000515935 105 ntBASIC2.26□□□□□ -2.05
DDX28Q9NUL7 RNU6-1178P-201ENST00000516674 107 ntBASIC2.26□□□□□ -2.05
DDX28Q9NUL7 RPL7P20-201ENST00000520308 745 ntBASIC2.26□□□□□ -2.05
DDX28Q9NUL7 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.26□□□□□ -2.05
DDX28Q9NUL7 AC243972.3-201ENST00000539655 198 ntBASIC2.26□□□□□ -2.05
DDX28Q9NUL7 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.26□□□□□ -2.05
DDX28Q9NUL7 SNORD53-201ENST00000579969 78 ntBASIC2.26□□□□□ -2.05
DDX28Q9NUL7 LRRC37A5P-203ENST00000580181 585 ntBASIC2.26□□□□□ -2.05
DDX28Q9NUL7 AC008536.2-201ENST00000607284 349 ntBASIC2.26□□□□□ -2.05
DDX28Q9NUL7 AC026585.1-201ENST00000619582 524 ntBASIC2.26□□□□□ -2.05
DDX28Q9NUL7 AL359757.2-201ENST00000624309 274 ntBASIC2.26□□□□□ -2.05
DDX28Q9NUL7 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
DDX28Q9NUL7 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.26□□□□□ -2.05
DDX28Q9NUL7 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
DDX28Q9NUL7 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
DDX28Q9NUL7 ZNF658B-202ENST00000615961 3375 ntBASIC2.25□□□□□ -2.05
DDX28Q9NUL7 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.25□□□□□ -2.05
DDX28Q9NUL7 RNU6-1119P-201ENST00000384349 108 ntBASIC2.25□□□□□ -2.05
DDX28Q9NUL7 BTF3P7-201ENST00000407097 488 ntBASIC2.25□□□□□ -2.05
DDX28Q9NUL7 SNORD23.1-201ENST00000408212 104 ntBASIC2.25□□□□□ -2.05
DDX28Q9NUL7 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.25□□□□□ -2.05
DDX28Q9NUL7 RNU2-29P-201ENST00000410423 189 ntBASIC2.25□□□□□ -2.05
DDX28Q9NUL7 CYCSP33-201ENST00000414485 327 ntBASIC2.25□□□□□ -2.05
DDX28Q9NUL7 AL669831.1-202ENST00000428504 417 ntBASIC2.25□□□□□ -2.05
DDX28Q9NUL7 AC073464.1-201ENST00000429823 534 ntBASIC2.25□□□□□ -2.05
DDX28Q9NUL7 AL365400.1-201ENST00000431854 640 ntBASIC2.25□□□□□ -2.05
DDX28Q9NUL7 GTF2IP13-201ENST00000438487 386 ntBASIC2.25□□□□□ -2.05
DDX28Q9NUL7 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.25□□□□□ -2.05
DDX28Q9NUL7 MTND2P22-201ENST00000444325 1033 ntBASIC2.25□□□□□ -2.05
DDX28Q9NUL7 AL513328.1-201ENST00000446460 224 ntBASIC2.25□□□□□ -2.05
DDX28Q9NUL7 AL031659.1-201ENST00000447075 539 ntBASIC2.25□□□□□ -2.05
DDX28Q9NUL7 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.25□□□□□ -2.05
DDX28Q9NUL7 AL118520.1-201ENST00000450770 291 ntBASIC2.25□□□□□ -2.05
DDX28Q9NUL7 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC2.25□□□□□ -2.05
DDX28Q9NUL7 AC092436.1-201ENST00000506450 503 ntBASIC2.25□□□□□ -2.05
DDX28Q9NUL7 AC008526.1-201ENST00000509149 338 ntBASIC2.25□□□□□ -2.05
DDX28Q9NUL7 AC117522.2-201ENST00000510049 657 ntBASIC2.25□□□□□ -2.05
DDX28Q9NUL7 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.25□□□□□ -2.05
DDX28Q9NUL7 SNORA43.2-201ENST00000516652 128 ntBASIC2.25□□□□□ -2.05
DDX28Q9NUL7 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.25□□□□□ -2.05
DDX28Q9NUL7 BNIP3P6-201ENST00000549284 499 ntBASIC2.25□□□□□ -2.05
DDX28Q9NUL7 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.25□□□□□ -2.05
DDX28Q9NUL7 AC136619.2-201ENST00000563361 631 ntBASIC2.25□□□□□ -2.05
DDX28Q9NUL7 MIR3611-201ENST00000584484 83 ntBASIC2.25□□□□□ -2.05
DDX28Q9NUL7 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.25□□□□□ -2.05
DDX28Q9NUL7 BNIP3P30-201ENST00000601184 574 ntBASIC2.25□□□□□ -2.05
DDX28Q9NUL7 AC021646.1-201ENST00000605469 484 ntBASIC2.25□□□□□ -2.05
DDX28Q9NUL7 AL121917.1-203ENST00000605534 577 ntBASIC2.25□□□□□ -2.05
DDX28Q9NUL7 RMST_7.1-201ENST00000621935 268 ntBASIC2.25□□□□□ -2.05
DDX28Q9NUL7 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.25□□□□□ -2.05
DDX28Q9NUL7 RBBP8P1-201ENST00000449447 1844 ntBASIC2.25□□□□□ -2.05
DDX28Q9NUL7 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.25□□□□□ -2.05
DDX28Q9NUL7 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
DDX28Q9NUL7 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
DDX28Q9NUL7 Y_RNA.51-201ENST00000362725 102 ntBASIC2.24□□□□□ -2.05
DDX28Q9NUL7 Y_RNA.296-201ENST00000364930 108 ntBASIC2.24□□□□□ -2.05
DDX28Q9NUL7 SNORD116-20-201ENST00000384529 92 ntBASIC2.24□□□□□ -2.05
DDX28Q9NUL7 AL162578.1-201ENST00000406202 378 ntBASIC2.24□□□□□ -2.05
DDX28Q9NUL7 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.24□□□□□ -2.05
DDX28Q9NUL7 WARS2P1-201ENST00000429678 537 ntBASIC2.24□□□□□ -2.05
DDX28Q9NUL7 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.24□□□□□ -2.05
DDX28Q9NUL7 MTATP6P26-201ENST00000445926 662 ntBASIC2.24□□□□□ -2.05
DDX28Q9NUL7 MTND1P29-201ENST00000448112 647 ntBASIC2.24□□□□□ -2.05
DDX28Q9NUL7 MTCO2P18-201ENST00000457151 658 ntBASIC2.24□□□□□ -2.05
DDX28Q9NUL7 AC117503.1-201ENST00000472241 394 ntBASIC2.24□□□□□ -2.05
DDX28Q9NUL7 HMGB1P29-201ENST00000505659 499 ntBASIC2.24□□□□□ -2.05
DDX28Q9NUL7 AC109329.1-201ENST00000518744 317 ntBASIC2.24□□□□□ -2.05
DDX28Q9NUL7 CKS1BP7-201ENST00000522230 235 ntBASIC2.24□□□□□ -2.05
DDX28Q9NUL7 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC2.24□□□□□ -2.05
DDX28Q9NUL7 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.24□□□□□ -2.05
DDX28Q9NUL7 AL031601.2-202ENST00000622650 282 ntBASIC2.24□□□□□ -2.05
DDX28Q9NUL7 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
DDX28Q9NUL7 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.24□□□□□ -2.05
DDX28Q9NUL7 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.24□□□□□ -2.05
DDX28Q9NUL7 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
DDX28Q9NUL7 SNORD62.1-201ENST00000362541 86 ntBASIC2.23□□□□□ -2.05
DDX28Q9NUL7 RNU6-1010P-201ENST00000362757 107 ntBASIC2.23□□□□□ -2.05
DDX28Q9NUL7 RNA5SP125-201ENST00000364843 120 ntBASIC2.23□□□□□ -2.05
DDX28Q9NUL7 RNU6-1042P-201ENST00000384204 107 ntBASIC2.23□□□□□ -2.05
DDX28Q9NUL7 RNU6-393P-201ENST00000384475 107 ntBASIC2.23□□□□□ -2.05
DDX28Q9NUL7 MIR1261-201ENST00000408659 82 ntBASIC2.23□□□□□ -2.05
DDX28Q9NUL7 U3.40-201ENST00000408706 208 ntBASIC2.23□□□□□ -2.05
DDX28Q9NUL7 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC2.23□□□□□ -2.05
DDX28Q9NUL7 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC2.23□□□□□ -2.05
DDX28Q9NUL7 UBE2V1P10-201ENST00000414685 269 ntBASIC2.23□□□□□ -2.05
DDX28Q9NUL7 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.23□□□□□ -2.05
DDX28Q9NUL7 CYCSP48-201ENST00000417124 323 ntBASIC2.23□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms