Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.27□□□□□ -2.05
LIME1Q9H400 SEPT14P3-201ENST00000439401 183 ntBASIC2.27□□□□□ -2.05
LIME1Q9H400 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.27□□□□□ -2.05
LIME1Q9H400 OSTCP8-201ENST00000445117 448 ntBASIC2.27□□□□□ -2.05
LIME1Q9H400 AL732372.2-207ENST00000445840 183 ntBASIC2.27□□□□□ -2.05
LIME1Q9H400 SEPT14P2-201ENST00000453405 183 ntBASIC2.27□□□□□ -2.05
LIME1Q9H400 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.27□□□□□ -2.05
LIME1Q9H400 SEPT14P4-201ENST00000513445 186 ntBASIC2.27□□□□□ -2.05
LIME1Q9H400 RNU6-314P-201ENST00000516574 104 ntBASIC2.27□□□□□ -2.05
LIME1Q9H400 Y_RNA.704-201ENST00000516851 102 ntBASIC2.27□□□□□ -2.05
LIME1Q9H400 MTND1P5-201ENST00000517906 940 ntBASIC2.27□□□□□ -2.05
LIME1Q9H400 FO082796.1-201ENST00000523795 183 ntBASIC2.27□□□□□ -2.05
LIME1Q9H400 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.27□□□□□ -2.05
LIME1Q9H400 MDM2-233ENST00000545204 398 ntTSL 5 BASIC2.27□□□□□ -2.05
LIME1Q9H400 AC090115.3-201ENST00000553218 849 ntBASIC2.27□□□□□ -2.05
LIME1Q9H400 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC2.27□□□□□ -2.05
LIME1Q9H400 AC007151.1-201ENST00000572774 483 ntBASIC2.27□□□□□ -2.05
LIME1Q9H400 AC146944.4-201ENST00000602697 718 ntBASIC2.27□□□□□ -2.05
LIME1Q9H400 AL162413.1-201ENST00000603198 110 ntBASIC2.27□□□□□ -2.05
LIME1Q9H400 AC004492.1-201ENST00000607036 742 ntBASIC2.27□□□□□ -2.05
LIME1Q9H400 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC2.27□□□□□ -2.05
LIME1Q9H400 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.27□□□□□ -2.05
LIME1Q9H400 FER-210ENST00000628534 558 ntTSL 5 BASIC2.27□□□□□ -2.05
LIME1Q9H400 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.27□□□□□ -2.05
LIME1Q9H400 AC138915.1-201ENST00000565427 1685 ntBASIC2.27□□□□□ -2.05
LIME1Q9H400 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.27□□□□□ -2.05
LIME1Q9H400 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.27□□□□□ -2.05
LIME1Q9H400 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
LIME1Q9H400 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
LIME1Q9H400 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
LIME1Q9H400 RNU6-451P-201ENST00000362921 107 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 RNY3P3-201ENST00000363816 102 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 RNU6-1303P-201ENST00000364841 107 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 SNORD21-201ENST00000383953 95 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 RNU6-483P-201ENST00000384088 108 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 Y_RNA.554-201ENST00000384672 102 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 MIR592-201ENST00000384959 97 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
LIME1Q9H400 AL590002.1-201ENST00000406554 418 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.26□□□□□ -2.05
LIME1Q9H400 MTCO1P21-201ENST00000416634 589 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 PTGES3P4-201ENST00000426243 356 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.26□□□□□ -2.05
LIME1Q9H400 MTND1P4-201ENST00000435196 415 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 TRAPPC2P3-201ENST00000443200 321 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
LIME1Q9H400 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.26□□□□□ -2.05
LIME1Q9H400 RNU7-167P-201ENST00000459160 62 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 SRIP1-201ENST00000489235 288 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
LIME1Q9H400 AC116655.1-201ENST00000508324 901 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 AC074344.1-201ENST00000512823 224 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 SCARNA17.1-201ENST00000516211 143 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 RNU6-581P-201ENST00000516214 105 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 RNU6-1281P-201ENST00000516223 105 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 SCARNA17.2-201ENST00000516334 143 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 RNU6-826P-201ENST00000516827 104 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 ACA59.2-201ENST00000517061 156 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 SNORA25.17-201ENST00000517184 124 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.26□□□□□ -2.05
LIME1Q9H400 AP004607.1-201ENST00000524456 203 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 AC109635.3-201ENST00000529536 185 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC2.26□□□□□ -2.05
LIME1Q9H400 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.26□□□□□ -2.05
LIME1Q9H400 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.26□□□□□ -2.05
LIME1Q9H400 AP003465.2-201ENST00000602571 373 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 AP000787.2-201ENST00000604432 568 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 SCARNA17.4-201ENST00000614296 143 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 YWHAEP7-203ENST00000622054 312 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 AL031601.2-202ENST00000622650 282 ntBASIC2.26□□□□□ -2.05
LIME1Q9H400 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.26□□□□□ -2.05
LIME1Q9H400 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.26□□□□□ -2.05
LIME1Q9H400 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.25□□□□□ -2.05
LIME1Q9H400 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.25□□□□□ -2.05
LIME1Q9H400 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
LIME1Q9H400 Y_RNA.9-201ENST00000362354 101 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 SNORD62.1-201ENST00000362541 86 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 RNY4P14-201ENST00000363656 96 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 RNU6-38P-201ENST00000384085 107 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 Y_RNA.480-201ENST00000384364 102 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 AL606923.1-201ENST00000406616 190 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 RAP1BP3-201ENST00000407180 549 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 RNU4-53P-201ENST00000410828 140 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 RPL19P1-201ENST00000411635 428 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.25□□□□□ -2.05
LIME1Q9H400 BX682237.1-201ENST00000415016 335 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 RPL7P10-201ENST00000417407 739 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 USP9YP18-201ENST00000425912 695 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 CALM1P1-201ENST00000442082 433 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 PRPS1P1-201ENST00000445305 876 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 IFNA11P-201ENST00000446352 526 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 HIGD1AP2-201ENST00000446367 280 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 NDUFAF4P4-201ENST00000454883 502 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 AC233279.1-201ENST00000455300 423 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 RNU6-333P-201ENST00000459117 107 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 AC133134.1-201ENST00000466800 359 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 DYNLL1P5-201ENST00000467158 270 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 AC008571.1-201ENST00000467232 300 ntBASIC2.25□□□□□ -2.05
LIME1Q9H400 MTAPP1-201ENST00000489154 819 ntBASIC2.25□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms