Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 RNU4-60P-201ENST00000517239 135 ntBASIC3.41□□□□□ -1.86
VRK3Q8IV63 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.41□□□□□ -1.86
VRK3Q8IV63 AC084851.1-201ENST00000529105 249 ntBASIC3.41□□□□□ -1.86
VRK3Q8IV63 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.41□□□□□ -1.86
VRK3Q8IV63 AL355877.2-201ENST00000603670 358 ntBASIC3.41□□□□□ -1.86
VRK3Q8IV63 AL161798.1-201ENST00000604630 131 ntBASIC3.41□□□□□ -1.86
VRK3Q8IV63 AC107294.1-201ENST00000609524 467 ntBASIC3.41□□□□□ -1.86
VRK3Q8IV63 MIR8076-201ENST00000611401 83 ntBASIC3.41□□□□□ -1.86
VRK3Q8IV63 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC3.41□□□□□ -1.86
VRK3Q8IV63 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
VRK3Q8IV63 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.41□□□□□ -1.86
VRK3Q8IV63 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
VRK3Q8IV63 AL136964.1-201ENST00000622038 2990 ntBASIC3.41□□□□□ -1.86
VRK3Q8IV63 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
VRK3Q8IV63 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.4□□□□□ -1.86
VRK3Q8IV63 MTND5P9-201ENST00000503854 1755 ntBASIC3.4□□□□□ -1.86
VRK3Q8IV63 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.4□□□□□ -1.86
VRK3Q8IV63 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.86
VRK3Q8IV63 AL161912.2-201ENST00000565707 3007 ntBASIC3.4□□□□□ -1.86
VRK3Q8IV63 RNU4-35P-201ENST00000362588 141 ntBASIC3.4□□□□□ -1.87
VRK3Q8IV63 Y_RNA.33-201ENST00000362591 102 ntBASIC3.4□□□□□ -1.87
VRK3Q8IV63 RNU1-76P-201ENST00000362903 159 ntBASIC3.4□□□□□ -1.87
VRK3Q8IV63 Y_RNA.84-201ENST00000363011 104 ntBASIC3.4□□□□□ -1.87
VRK3Q8IV63 RNU6-512P-201ENST00000364438 103 ntBASIC3.4□□□□□ -1.87
VRK3Q8IV63 SNORD6-201ENST00000365444 73 ntBASIC3.4□□□□□ -1.87
VRK3Q8IV63 RNU6-338P-201ENST00000383888 105 ntBASIC3.4□□□□□ -1.87
VRK3Q8IV63 RNU6-708P-201ENST00000384217 107 ntBASIC3.4□□□□□ -1.87
VRK3Q8IV63 SNORD17-201ENST00000390930 237 ntBASIC3.4□□□□□ -1.87
VRK3Q8IV63 RNU6-700P-201ENST00000391043 107 ntBASIC3.4□□□□□ -1.87
VRK3Q8IV63 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.4□□□□□ -1.87
VRK3Q8IV63 AL592148.1-201ENST00000413568 445 ntBASIC3.4□□□□□ -1.87
VRK3Q8IV63 RPS29P4-201ENST00000414733 161 ntBASIC3.4□□□□□ -1.87
VRK3Q8IV63 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
VRK3Q8IV63 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.4□□□□□ -1.87
VRK3Q8IV63 AL159987.2-201ENST00000432754 307 ntBASIC3.4□□□□□ -1.87
VRK3Q8IV63 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.4□□□□□ -1.87
VRK3Q8IV63 RBMY2UP-201ENST00000453474 324 ntBASIC3.4□□□□□ -1.87
VRK3Q8IV63 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.4□□□□□ -1.87
VRK3Q8IV63 AC098869.1-201ENST00000481627 292 ntBASIC3.4□□□□□ -1.87
VRK3Q8IV63 AC007458.1-201ENST00000542812 373 ntBASIC3.4□□□□□ -1.87
VRK3Q8IV63 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.4□□□□□ -1.87
VRK3Q8IV63 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3.4□□□□□ -1.87
VRK3Q8IV63 AC098826.3-201ENST00000603823 466 ntBASIC3.4□□□□□ -1.87
VRK3Q8IV63 SNORA51-201ENST00000606420 132 ntBASIC3.4□□□□□ -1.87
VRK3Q8IV63 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.4□□□□□ -1.87
VRK3Q8IV63 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.4□□□□□ -1.87
VRK3Q8IV63 AL360181.4-201ENST00000621752 134 ntBASIC3.4□□□□□ -1.87
VRK3Q8IV63 AC243829.7-201ENST00000633081 225 ntBASIC3.4□□□□□ -1.87
VRK3Q8IV63 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
VRK3Q8IV63 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.4□□□□□ -1.87
VRK3Q8IV63 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.4□□□□□ -1.87
VRK3Q8IV63 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.4□□□□□ -1.87
VRK3Q8IV63 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
VRK3Q8IV63 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.4□□□□□ -1.87
VRK3Q8IV63 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
VRK3Q8IV63 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.39□□□□□ -1.87
VRK3Q8IV63 RNU1-35P-201ENST00000362782 153 ntBASIC3.39□□□□□ -1.87
VRK3Q8IV63 SNORD50.1-201ENST00000362987 71 ntBASIC3.39□□□□□ -1.87
VRK3Q8IV63 RNU6-1167P-201ENST00000363227 94 ntBASIC3.39□□□□□ -1.87
VRK3Q8IV63 Y_RNA.458-201ENST00000384240 102 ntBASIC3.39□□□□□ -1.87
VRK3Q8IV63 Y_RNA.462-201ENST00000384268 102 ntBASIC3.39□□□□□ -1.87
VRK3Q8IV63 MIR490-201ENST00000384865 128 ntBASIC3.39□□□□□ -1.87
VRK3Q8IV63 MIR200C-201ENST00000384980 68 ntBASIC3.39□□□□□ -1.87
VRK3Q8IV63 MIR218-2-201ENST00000385006 110 ntBASIC3.39□□□□□ -1.87
VRK3Q8IV63 SNORD115-46-201ENST00000390982 71 ntBASIC3.39□□□□□ -1.87
VRK3Q8IV63 SNORA48.7-201ENST00000391302 135 ntBASIC3.39□□□□□ -1.87
VRK3Q8IV63 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.39□□□□□ -1.87
VRK3Q8IV63 AL117339.3-201ENST00000418733 162 ntBASIC3.39□□□□□ -1.87
VRK3Q8IV63 AL158156.1-201ENST00000422509 473 ntBASIC3.39□□□□□ -1.87
VRK3Q8IV63 PIGPP3-201ENST00000425307 415 ntBASIC3.39□□□□□ -1.87
VRK3Q8IV63 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
VRK3Q8IV63 MTND3P9-201ENST00000429526 346 ntBASIC3.39□□□□□ -1.87
VRK3Q8IV63 AC092423.1-201ENST00000430165 186 ntBASIC3.39□□□□□ -1.87
VRK3Q8IV63 MTND5P15-201ENST00000434246 349 ntBASIC3.39□□□□□ -1.87
VRK3Q8IV63 HMGN2P7-201ENST00000456186 273 ntBASIC3.39□□□□□ -1.87
VRK3Q8IV63 RPS23P5-201ENST00000495419 428 ntBASIC3.39□□□□□ -1.87
VRK3Q8IV63 HMGB1P35-201ENST00000503360 598 ntBASIC3.39□□□□□ -1.87
VRK3Q8IV63 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.39□□□□□ -1.87
VRK3Q8IV63 AC074250.1-201ENST00000511117 192 ntBASIC3.39□□□□□ -1.87
VRK3Q8IV63 AC067942.3-201ENST00000512025 362 ntBASIC3.39□□□□□ -1.87
VRK3Q8IV63 SNORA31.6-201ENST00000516241 130 ntBASIC3.39□□□□□ -1.87
VRK3Q8IV63 RNU6-143P-201ENST00000516942 93 ntBASIC3.39□□□□□ -1.87
VRK3Q8IV63 SNORA81.3-201ENST00000517283 198 ntBASIC3.39□□□□□ -1.87
VRK3Q8IV63 IGKV2-23-201ENST00000518729 323 ntBASIC3.39□□□□□ -1.87
VRK3Q8IV63 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
VRK3Q8IV63 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.39□□□□□ -1.87
VRK3Q8IV63 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.39□□□□□ -1.87
VRK3Q8IV63 AC009318.2-201ENST00000610917 651 ntBASIC3.39□□□□□ -1.87
VRK3Q8IV63 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC3.39□□□□□ -1.87
VRK3Q8IV63 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
VRK3Q8IV63 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.39□□□□□ -1.87
VRK3Q8IV63 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.39□□□□□ -1.87
VRK3Q8IV63 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
VRK3Q8IV63 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.38□□□□□ -1.87
VRK3Q8IV63 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VRK3Q8IV63 AC093908.1-201ENST00000623125 8092 ntBASIC3.38□□□□□ -1.87
VRK3Q8IV63 Y_RNA.27-201ENST00000362540 103 ntBASIC3.38□□□□□ -1.87
VRK3Q8IV63 RNU6-37P-201ENST00000362692 107 ntBASIC3.38□□□□□ -1.87
VRK3Q8IV63 RNU6-11P-201ENST00000364234 107 ntBASIC3.38□□□□□ -1.87
VRK3Q8IV63 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 124.7 ms