Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
USP3Q9Y6I4 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC19.86■□□□□ 0.77
USP3Q9Y6I4 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP3Q9Y6I4 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP3Q9Y6I4 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC19.86■□□□□ 0.77
USP3Q9Y6I4 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP3Q9Y6I4 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP3Q9Y6I4 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC19.86■□□□□ 0.77
USP3Q9Y6I4 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP3Q9Y6I4 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC19.86■□□□□ 0.77
USP3Q9Y6I4 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC19.86■□□□□ 0.77
USP3Q9Y6I4 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP3Q9Y6I4 MIR4674-201ENST00000582457 87 ntBASIC19.86■□□□□ 0.77
USP3Q9Y6I4 AL138966.2-201ENST00000621997 464 ntBASIC19.86■□□□□ 0.77
USP3Q9Y6I4 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP3Q9Y6I4 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP3Q9Y6I4 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP3Q9Y6I4 AP000974.1-201ENST00000623909 2387 ntBASIC19.86■□□□□ 0.77
USP3Q9Y6I4 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
USP3Q9Y6I4 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.86■□□□□ 0.77
USP3Q9Y6I4 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP3Q9Y6I4 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
USP3Q9Y6I4 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
USP3Q9Y6I4 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC19.85■□□□□ 0.77
USP3Q9Y6I4 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
USP3Q9Y6I4 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP3Q9Y6I4 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP3Q9Y6I4 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP3Q9Y6I4 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP3Q9Y6I4 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC19.85■□□□□ 0.77
USP3Q9Y6I4 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC19.85■□□□□ 0.77
USP3Q9Y6I4 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.85■□□□□ 0.77
USP3Q9Y6I4 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.85■□□□□ 0.77
USP3Q9Y6I4 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP3Q9Y6I4 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP3Q9Y6I4 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP3Q9Y6I4 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
USP3Q9Y6I4 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP3Q9Y6I4 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
USP3Q9Y6I4 AL049812.1-201ENST00000432563 2267 ntBASIC19.85■□□□□ 0.77
USP3Q9Y6I4 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.84■□□□□ 0.77
USP3Q9Y6I4 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USP3Q9Y6I4 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC19.84■□□□□ 0.77
USP3Q9Y6I4 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
USP3Q9Y6I4 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.84■□□□□ 0.77
USP3Q9Y6I4 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
USP3Q9Y6I4 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP3Q9Y6I4 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC19.84■□□□□ 0.77
USP3Q9Y6I4 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP3Q9Y6I4 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP3Q9Y6I4 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP3Q9Y6I4 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP3Q9Y6I4 KRT18P21-201ENST00000515767 1272 ntBASIC19.84■□□□□ 0.77
USP3Q9Y6I4 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USP3Q9Y6I4 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
USP3Q9Y6I4 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.84■□□□□ 0.77
USP3Q9Y6I4 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.84■□□□□ 0.77
USP3Q9Y6I4 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
USP3Q9Y6I4 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC19.84■□□□□ 0.77
USP3Q9Y6I4 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.84■□□□□ 0.77
USP3Q9Y6I4 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
USP3Q9Y6I4 LGALS8-AS1-201ENST00000487567 1457 ntBASIC19.84■□□□□ 0.77
USP3Q9Y6I4 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
USP3Q9Y6I4 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP3Q9Y6I4 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP3Q9Y6I4 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP3Q9Y6I4 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC19.84■□□□□ 0.77
USP3Q9Y6I4 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP3Q9Y6I4 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP3Q9Y6I4 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.83■□□□□ 0.77
USP3Q9Y6I4 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.83■□□□□ 0.77
USP3Q9Y6I4 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP3Q9Y6I4 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
USP3Q9Y6I4 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP3Q9Y6I4 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP3Q9Y6I4 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
USP3Q9Y6I4 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC19.83■□□□□ 0.77
USP3Q9Y6I4 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.83■□□□□ 0.77
USP3Q9Y6I4 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.83■□□□□ 0.77
USP3Q9Y6I4 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP3Q9Y6I4 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.83■□□□□ 0.77
USP3Q9Y6I4 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP3Q9Y6I4 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP3Q9Y6I4 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
USP3Q9Y6I4 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.83■□□□□ 0.77
USP3Q9Y6I4 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP3Q9Y6I4 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.83■□□□□ 0.77
USP3Q9Y6I4 PHB2-202ENST00000440277 996 ntTSL 5 BASIC19.83■□□□□ 0.77
USP3Q9Y6I4 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC19.83■□□□□ 0.77
USP3Q9Y6I4 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.83■□□□□ 0.77
USP3Q9Y6I4 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC19.83■□□□□ 0.77
USP3Q9Y6I4 RN7SL850P-201ENST00000579959 291 ntBASIC19.83■□□□□ 0.77
USP3Q9Y6I4 GPX4-207ENST00000589115 812 ntTSL 2 BASIC19.83■□□□□ 0.77
USP3Q9Y6I4 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC19.83■□□□□ 0.77
USP3Q9Y6I4 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
USP3Q9Y6I4 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
USP3Q9Y6I4 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC19.83■□□□□ 0.76
USP3Q9Y6I4 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC19.83■□□□□ 0.76
USP3Q9Y6I4 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
USP3Q9Y6I4 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms