Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 AC069544.1-201ENST00000609399 999 ntBASIC16.65■□□□□ 0.26
RHBDD3Q9Y3P4 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC16.65■□□□□ 0.26
RHBDD3Q9Y3P4 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
RHBDD3Q9Y3P4 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RHBDD3Q9Y3P4 ANKRD18DP-204ENST00000455355 1975 ntBASIC16.65■□□□□ 0.26
RHBDD3Q9Y3P4 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC16.65■□□□□ 0.26
RHBDD3Q9Y3P4 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RHBDD3Q9Y3P4 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RHBDD3Q9Y3P4 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
RHBDD3Q9Y3P4 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
RHBDD3Q9Y3P4 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RHBDD3Q9Y3P4 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
RHBDD3Q9Y3P4 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
RHBDD3Q9Y3P4 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
RHBDD3Q9Y3P4 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.26
RHBDD3Q9Y3P4 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
RHBDD3Q9Y3P4 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 ESRRAP1-201ENST00000400596 1257 ntBASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 F2R-202ENST00000505600 442 ntTSL 2 BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 MTDHP1-201ENST00000605323 784 ntBASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 AC104581.1-202ENST00000635932 2618 ntBASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 USP49-202ENST00000373010 2446 ntTSL 5 BASIC16.64■□□□□ 0.25
RHBDD3Q9Y3P4 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 NBPF21P-201ENST00000425093 1451 ntBASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 AC104417.2-201ENST00000562989 1793 ntBASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 SDHAP1-207ENST00000440850 2000 ntBASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDD3Q9Y3P4 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RHBDD3Q9Y3P4 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RHBDD3Q9Y3P4 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC16.62■□□□□ 0.25
RHBDD3Q9Y3P4 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RHBDD3Q9Y3P4 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RHBDD3Q9Y3P4 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
RHBDD3Q9Y3P4 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC16.62■□□□□ 0.25
RHBDD3Q9Y3P4 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
RHBDD3Q9Y3P4 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RHBDD3Q9Y3P4 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC16.62■□□□□ 0.25
RHBDD3Q9Y3P4 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC16.62■□□□□ 0.25
RHBDD3Q9Y3P4 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RHBDD3Q9Y3P4 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
RHBDD3Q9Y3P4 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC16.62■□□□□ 0.25
RHBDD3Q9Y3P4 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC16.62■□□□□ 0.25
RHBDD3Q9Y3P4 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
RHBDD3Q9Y3P4 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC16.62■□□□□ 0.25
RHBDD3Q9Y3P4 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC16.62■□□□□ 0.25
RHBDD3Q9Y3P4 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC16.62■□□□□ 0.25
RHBDD3Q9Y3P4 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms