Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
BLOC1S4Q9NUP1 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
BLOC1S4Q9NUP1 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC21.15■□□□□ 0.98
BLOC1S4Q9NUP1 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
BLOC1S4Q9NUP1 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
BLOC1S4Q9NUP1 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC21.15■□□□□ 0.98
BLOC1S4Q9NUP1 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
BLOC1S4Q9NUP1 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
BLOC1S4Q9NUP1 AL031598.1-201ENST00000561511 1773 ntBASIC21.15■□□□□ 0.98
BLOC1S4Q9NUP1 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
BLOC1S4Q9NUP1 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
BLOC1S4Q9NUP1 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
BLOC1S4Q9NUP1 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.98
BLOC1S4Q9NUP1 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.98
BLOC1S4Q9NUP1 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC21.14■□□□□ 0.98
BLOC1S4Q9NUP1 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
BLOC1S4Q9NUP1 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
BLOC1S4Q9NUP1 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC21.14■□□□□ 0.98
BLOC1S4Q9NUP1 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
BLOC1S4Q9NUP1 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
BLOC1S4Q9NUP1 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC21.14■□□□□ 0.97
BLOC1S4Q9NUP1 AL596275.1-201ENST00000423464 877 ntBASIC21.14■□□□□ 0.97
BLOC1S4Q9NUP1 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
BLOC1S4Q9NUP1 AC093827.2-201ENST00000512654 315 ntBASIC21.14■□□□□ 0.97
BLOC1S4Q9NUP1 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC21.14■□□□□ 0.97
BLOC1S4Q9NUP1 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
BLOC1S4Q9NUP1 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC21.14■□□□□ 0.97
BLOC1S4Q9NUP1 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC21.14■□□□□ 0.97
BLOC1S4Q9NUP1 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC21.14■□□□□ 0.97
BLOC1S4Q9NUP1 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
BLOC1S4Q9NUP1 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
BLOC1S4Q9NUP1 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC21.14■□□□□ 0.97
BLOC1S4Q9NUP1 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
BLOC1S4Q9NUP1 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
BLOC1S4Q9NUP1 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
BLOC1S4Q9NUP1 AL512353.2-201ENST00000448759 1962 ntBASIC21.14■□□□□ 0.97
BLOC1S4Q9NUP1 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC21.14■□□□□ 0.97
BLOC1S4Q9NUP1 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
BLOC1S4Q9NUP1 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 SNX21-213ENST00000614929 587 ntTSL 5 BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 TBC1D3P2-202ENST00000577902 1649 ntBASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
BLOC1S4Q9NUP1 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
BLOC1S4Q9NUP1 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC21.12■□□□□ 0.97
BLOC1S4Q9NUP1 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
BLOC1S4Q9NUP1 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
BLOC1S4Q9NUP1 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
BLOC1S4Q9NUP1 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC21.12■□□□□ 0.97
BLOC1S4Q9NUP1 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC21.12■□□□□ 0.97
BLOC1S4Q9NUP1 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
BLOC1S4Q9NUP1 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
BLOC1S4Q9NUP1 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC21.12■□□□□ 0.97
BLOC1S4Q9NUP1 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC21.12■□□□□ 0.97
BLOC1S4Q9NUP1 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
BLOC1S4Q9NUP1 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC21.12■□□□□ 0.97
BLOC1S4Q9NUP1 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC21.12■□□□□ 0.97
BLOC1S4Q9NUP1 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
BLOC1S4Q9NUP1 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
BLOC1S4Q9NUP1 KATNBL1P6-202ENST00000562413 1466 ntBASIC21.12■□□□□ 0.97
BLOC1S4Q9NUP1 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC21.12■□□□□ 0.97
BLOC1S4Q9NUP1 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
BLOC1S4Q9NUP1 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
BLOC1S4Q9NUP1 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
BLOC1S4Q9NUP1 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
BLOC1S4Q9NUP1 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
BLOC1S4Q9NUP1 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
BLOC1S4Q9NUP1 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
BLOC1S4Q9NUP1 CRYGFP-201ENST00000418459 633 ntBASIC21.11■□□□□ 0.97
BLOC1S4Q9NUP1 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC21.11■□□□□ 0.97
BLOC1S4Q9NUP1 AP005242.2-201ENST00000580065 1175 ntBASIC21.11■□□□□ 0.97
BLOC1S4Q9NUP1 AP000525.1-201ENST00000608286 694 ntBASIC21.11■□□□□ 0.97
BLOC1S4Q9NUP1 AC008622.2-201ENST00000617006 1229 ntBASIC21.11■□□□□ 0.97
BLOC1S4Q9NUP1 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms