Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
DDX28Q9NUL7 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC17.37■□□□□ 0.37
DDX28Q9NUL7 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC17.37■□□□□ 0.37
DDX28Q9NUL7 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
DDX28Q9NUL7 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
DDX28Q9NUL7 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
DDX28Q9NUL7 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
DDX28Q9NUL7 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
DDX28Q9NUL7 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
DDX28Q9NUL7 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
DDX28Q9NUL7 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
DDX28Q9NUL7 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
DDX28Q9NUL7 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
DDX28Q9NUL7 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.37■□□□□ 0.37
DDX28Q9NUL7 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
DDX28Q9NUL7 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
DDX28Q9NUL7 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
DDX28Q9NUL7 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DDX28Q9NUL7 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
DDX28Q9NUL7 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
DDX28Q9NUL7 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC17.36■□□□□ 0.37
DDX28Q9NUL7 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
DDX28Q9NUL7 BX276092.2-201ENST00000417668 665 ntBASIC17.36■□□□□ 0.37
DDX28Q9NUL7 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
DDX28Q9NUL7 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC17.36■□□□□ 0.37
DDX28Q9NUL7 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC17.36■□□□□ 0.37
DDX28Q9NUL7 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
DDX28Q9NUL7 AL121832.2-201ENST00000610979 668 ntBASIC17.36■□□□□ 0.37
DDX28Q9NUL7 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC17.36■□□□□ 0.37
DDX28Q9NUL7 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC17.36■□□□□ 0.37
DDX28Q9NUL7 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
DDX28Q9NUL7 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
DDX28Q9NUL7 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DDX28Q9NUL7 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
DDX28Q9NUL7 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC17.36■□□□□ 0.37
DDX28Q9NUL7 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
DDX28Q9NUL7 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 Z82202.1-201ENST00000623446 1880 ntBASIC17.35■□□□□ 0.37
DDX28Q9NUL7 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.35■□□□□ 0.37
DDX28Q9NUL7 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 ABHD17AP1-201ENST00000358206 933 ntBASIC17.35■□□□□ 0.37
DDX28Q9NUL7 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 CD99P1-205ENST00000527459 561 ntBASIC17.35■□□□□ 0.37
DDX28Q9NUL7 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 TMEM191A-211ENST00000637163 1067 ntBASIC17.35■□□□□ 0.37
DDX28Q9NUL7 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 MOK-233ENST00000524214 1539 ntTSL 2 BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 PHGDH-210ENST00000641115 1638 ntBASIC17.35■□□□□ 0.37
DDX28Q9NUL7 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DDX28Q9NUL7 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 SERPINH1P1-201ENST00000419794 1249 ntBASIC17.34■□□□□ 0.37
DDX28Q9NUL7 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 SERP1-205ENST00000487153 657 ntTSL 4 BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms